SCimilarity Models

DOI10.5281/zenodo.10685499Zenodo10685499MaRDI QIDQ6683750FDOQ6683750

Dataset published at Zenodo repository.

Jason A. vander Heiden, Héctor Corrada Bravo, Tony Kuo, Nathaniel Diamant, Graham Heimberg, Omar Salem

Publication date: 20 February 2024

Copyright license: Creative Commons Attribution-ShareAlike 4.0 International

Description

SCimilarity is a unifying representation of single-cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training. This enables a novel cell search capability, which sifts through millions of profiles to find cells similar to a query cell state and allows researchers to quickly and systematically leverage massive public scRNA-seq atlases to learn about a cell state of interest. This repository includes model weights, embeddings, kNN graphs, and metadata for the SCimilarity cell search model as a single tarball. This release of the model is intended for use with v0.2.0 of the SCimilarity API.

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