Supplementary data for 'scROSHI - robust supervised hierarchical identification of single cells'

DOI10.5281/zenodo.6577402Zenodo6577402MaRDI QIDQ6686527FDOQ6686527

Dataset published at Zenodo repository.

Michael Prummer

Publication date: 24 May 2022

Copyright license: Creative Commons Attribution 4.0 International

Description

This record contains some of the supplementary files for the manuscript scROSHI - robust supervised hierarchical identification of single cells by Prummer et al. The file scROSHI_Fig03_counts.zip contains SingleCellExperiment R objects as RDS files, sce_A.RDS, sce_B.RDS, sce_C.RDS, corresponding to the three samples shown in Figure 3.The assay slot of the SingleCellExperiment objects contains the gene x cell raw count matrix, the colData slot contains the description for each cell: barcode, celltype_major, celltype_final, cnv_status. Please see https://github.com/ETH-NEXUS/scROSHI for code generating the cell type labels.

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