iSDAsoil: soil extractable Calcium for Africa predicted at 30 m resolution at 0-20 and 20-50 cm depths
DOI10.5281/zenodo.4087972Zenodo4087972MaRDI QIDQ6688851FDOQ6688851
Dataset published at Zenodo repository.
Milan Kilibarda, Tomislav Hengl, Gifty Acquah, Andrew M. Sila, Josip Križan, Matt Miller
Publication date: 14 October 2020
Copyright license: Creative Commons Attribution 4.0 International
iSDAsoil dataset soil extractable Calcium log-transformed predicted at 30 m resolution for 020 and 2050 cm depth intervals. Data has been projected in WGS84 coordinate system and compiled as COG.Predictions have been generated using multi-scale Ensemble Machine Learning with 250 m (MODIS, PROBA-V, climatic variables and similar) and 30 m (DTM derivatives, Landsat, Sentinel-2 and similar) resolution covariates. For model training we use a pan-African compilations of soil samples and profiles (iSDA points, AfSPDB, and other national and regional soil datasets). Cite as: Hengl, T., Miller, M.A.E., Križan, J.et al.African soil properties and nutrients mapped at 30m spatial resolution using two-scale ensemble machine learning.Sci Rep11,6130 (2021). https://doi.org/10.1038/s41598-021-85639-y To open the maps in QGIS and/or directly compute with them, please use the Cloud-Optimized GeoTIFF version. Layer description: sol_log.ca_mehlich3_m_30m_*..*cm_2001..2017_v0.13_wgs84.tif = predicted soil extractable Calcium mean value, sol_log.ca_mehlich3_md_30m_*..*cm_2001..2017_v0.13_wgs84.tif = predicted soil extractable Calcium model (prediction) errors, Model errors were derived using bootstrapping: md is derived as standard deviation of individual learners from 5-fold cross-validation (using spatial blocking). The model 5-fold cross-validation (mlr::makeStackedLearner) for this variable indicates: Variable: log.ca_mehlich3 R-square: 0.84 Fitted values sd: 1.24 RMSE: 0.543 Random forest model: Call: stats::lm(formula = f, data = d) Residuals: Min 1Q Median 3Q Max -6.0376 -0.2577 0.0076 0.2756 5.3825 Coefficients: Estimate Std. Error t value Pr(|t|) (Intercept) 5.737959 3.850998 1.490 0.136 regr.ranger 1.054018 0.003175 331.978 2e-16 * regr.xgboost -0.030930 0.003939 -7.853 4.1e-15 * regr.cubist 0.061829 0.003561 17.364 2e-16 * regr.nnet -0.855297 0.561006 -1.525 0.127 regr.cvglmnet -0.065040 0.003225 -20.166 2e-16 * --- Signif. codes: 0 '*' 0.001 0.01 '*' 0.05 '.' 0.1 ' ' 1 Residual standard error: 0.5428 on 144593 degrees of freedom Multiple R-squared: 0.8403, Adjusted R-squared: 0.8402 F-statistic: 1.521e+05 on 5 and 144593 DF, p-value: 2.2e-16 To back-transform values (y) to ppm use the following formula: ppm = expm1( y / 10 ) To submit an issue or request support please visit https://isda-africa.com/isdasoil
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