iSDAsoil: soil extractable Magnesium for Africa predicted at 30 m resolution at 0-20 and 20-50 cm depths
DOI10.5281/zenodo.4090374Zenodo4090374MaRDI QIDQ6688881FDOQ6688881
Dataset published at Zenodo repository.
Andrew M. Sila, Milan Kilibarda, Matt Miller, Gifty Acquah, Tomislav Hengl, Josip Križan
Publication date: 15 October 2020
Copyright license: Creative Commons Attribution 4.0 International
iSDAsoil dataset soil extractable Magnesium (Mg) log-transformed predicted at 30 m resolution for 020 and 2050 cm depth intervals. Data has been projected in WGS84 coordinate system and compiled as COG.Predictions have been generated using multi-scale Ensemble Machine Learning with 250 m (MODIS, PROBA-V, climatic variables and similar) and 30 m (DTM derivatives, Landsat, Sentinel-2 and similar) resolution covariates. For model training we use a pan-African compilations of soil samples and profiles (iSDA points, AfSPDB, and other national and regional soil datasets). Cite as: Hengl, T., Miller, M.A.E., Križan, J.et al.African soil properties and nutrients mapped at 30m spatial resolution using two-scale ensemble machine learning.Sci Rep11,6130 (2021). https://doi.org/10.1038/s41598-021-85639-y To open the maps in QGIS and/or directly compute with them, please use the Cloud-Optimized GeoTIFF version. Layer description: sol_log.mg_mehlich3_m_30m_*..*cm_2001..2017_v0.13_wgs84.tif = predicted soil extractable Magnesium mean value, sol_log.mg_mehlich3_md_30m_*..*cm_2001..2017_v0.13_wgs84.tif = predicted soil extractable Magnesium model (prediction) errors, Model errors were derived using bootstrapping: md is derived as standard deviation of individual learners from 5-fold cross-validation (using spatial blocking). The model 5-fold cross-validation (mlr::makeStackedLearner) for this variable indicates: Variable: log.mg_mehlich3 R-square: 0.815 Fitted values sd: 1.05 RMSE: 0.498 Random forest model: Call: stats::lm(formula = f, data = d) Residuals: Min 1Q Median 3Q Max -5.8775 -0.2312 0.0028 0.2465 3.7400 Coefficients: Estimate Std. Error t value Pr(|t|) (Intercept) -0.034349 0.051219 -0.671 0.5025 regr.ranger 1.034217 0.003263 316.950 2e-16 * regr.xgboost -0.008057 0.003854 -2.091 0.0366 * regr.cubist 0.073223 0.003649 20.067 2e-16 * regr.nnet -0.017388 0.009528 -1.825 0.0680 . regr.cvglmnet -0.075566 0.003402 -22.213 2e-16 * --- Signif. codes: 0 '*' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 Residual standard error: 0.4979 on 136681 degrees of freedom Multiple R-squared: 0.8152, Adjusted R-squared: 0.8152 F-statistic: 1.206e+05 on 5 and 136681 DF, p-value: 2.2e-16 To back-transform values (y) to ppm use the following formula: ppm = expm1( y / 10 ) To submit an issue or request support please visit https://isda-africa.com/isdasoil
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