Endosymbiosis-independent evolution of starch as storage material of ciliates

DOI10.5281/zenodo.14277012Zenodo14277012MaRDI QIDQ6690405FDOQ6690405

Dataset published at Zenodo repository.

Kacper Ludwig, Andrzej Bodyl, Przemysław Gagat, Paweł MacKiewicz

Publication date: 4 December 2024

Copyright license: Creative Commons Attribution 4.0 International

Description

GWD_PWD_complete.fasta - non-aligned phylogenetic dataset GWD_PWD.fasta.L_INS_i - full aligment of GWD proteins prepared by MAFFT GWD_PWD.fasta.L_INS_i.gappy - trimmed aligment, directly used for phylogenetic analysis preparation GWD_PWD.nwk - the phylogenetic tree of GWD and PWD, as shown on figure S3 GWD_PWD_ciliates_reference.txt - representative ciliate GWD and PWD sequences, referenced in Table S2 GT5_ciliates_reference.txt - representative ciliate starch/glycogen synthase sequences, referenced in Table S6 GH13_ciliates_reference.txt - representative ciliate branching enzyme sequences, referenced in Table S7 GH13_GH133_ciliates_reference.txt - representative ciliate indirect debranching enzyme sequences, referenced in Table S8 GT35_ciliates_reference.txt - representative ciliate phosphorylase sequences, referenced in Table S9 GWD_PWD_colponemids_Goniomonas_Pygsuia_reference.txt - representative GWD and PWD sequences of Colponemids, Goniomonas and Pygsuia, referenced in Table S10

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