Processed proteomic and phosphoproteomic timeseries from Ostreococcus tauri, with Gene Ontology enrichment, from "A phospho-dawn of protein modification anticipates light onset in the picoeukaryote O. tauri"
DOI10.5281/zenodo.7742118Zenodo7742118MaRDI QIDQ6690802FDOQ6690802
Dataset published at Zenodo repository.
Thierry le Bihan, Zeenat Noordally, Andrew J. Millar, Sarah F. Martin, Matthew M. Hindle, Dr. T. Ian Simpson
Publication date: 16 March 2023
Copyright license: Creative Commons Attribution 4.0 International
Diel regulation of protein levels and protein modification had been less studied than transcript rhythms. These data tables in .XLSX format report partial proteome (Table_S1)and phosphoproteome data (Table_S2), assayed using shotgun mass-spectrometry, from cultures of the alga Ostreococcus tauriunder light-dark cycles, sampled at Zeitgeber times (ZT, hours) 0, 4, 8, 12, 16 and 20.10% of quantified proteins but two-thirds of phosphoproteins were rhythmic. Gene Ontology enrichment analysis was applied to infer the functional enrichment of the proteins or phosphoproteins, grouped by their loadings in PCA analysis (Table_S3), by hierarchical clustering (Table_S4) orby the peak time of their rhythmic profile (Table_S5).Prompted by night-peaking and apparently dark-stable proteins, we also tested the proteome of cultures transferred to prolonged darkness for 24, 48, 72 or 96h (Table_S6), where the proteome changed less than under the diel cycle. The raw data are available from ProteomeXchange, with identifiers PXD001734, PXD001735 and PXD002909.
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