Library size confounds biology in spatial transcriptomics data
DOI10.5281/zenodo.10516814Zenodo10516814MaRDI QIDQ6690822FDOQ6690822
Dataset published at Zenodo repository.
Chin Wee Tan, Malvika Kharbanda, Theresa E Hickey, Kristen Feher, Jinjin Chen, Marie Pickering, Dharmesh D Bhuva, Belinda Phipson, Agus Salim, Wayne D Tilley, Melissa J Davis, Marie-Liesse Asselin-Labat, Ning Liu, Claire Marceaux, Xinyi Jin, Givanna Putri
Publication date: 31 January 2024
Copyright license: Creative Commons Attribution 4.0 International
This dataset contains annotated sub-cellular localised spatial measurements from the Visium, Xenium and CosMx platforms. Specifically, it includes datasets analysed in the publication Bhuva et. al, 2023 titled Library size confounds biology in spatial transcriptomics data. Raw transcript detections are presented. Data is best accessed through the accompanying SubcellularSpatialData R/Bioconductor package. Region files used to annotate individual transcript detections are presented in the form of GeoJSON files.
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