sQTL catalog generated by sqtlseeker2-nf in the GTEx dataset

DOI10.5281/zenodo.4058759Zenodo4058759MaRDI QIDQ6691516FDOQ6691516

Dataset published at Zenodo repository.

Diego Garrido-Martín, Miquel Calvo, Beatrice Borsari, Roderic Guigó, Ferran Reverter

Publication date: 4 October 2020

Copyright license: Creative Commons Attribution 4.0 International

Description

sQTL catalog generated by sqtlseeker2-nf in the GTEx dataset, as described in the publication Identification and analysis of splicing quantitative trait loci across multiple tissues in the human genome by Garrido-Martn et al. in Nat. Commun. (https://doi.org/10.1038/s41467-020-20578-2). It contains the results of the sqtlseeker2-nf pipeline, run using different input data: i) RSEM transcript quantifications and genotype data from GTEx V7, ii) LeafCutter intron excision ratios and genotype data from GTEx V7 and iii) RSEM transcript quantifications and genotype data from GTEx V8. For each GTEx tissue, it includes summary statistics corresponding to all the tests performed (both nominal and permutation passes) and the significant sQTLs identified.

This page was built for dataset: sQTL catalog generated by sqtlseeker2-nf in the GTEx dataset