Biotea-2-Bioschemas test data

DOI10.5281/zenodo.2595281Zenodo2595281MaRDI QIDQ6693377FDOQ6693377

Dataset published at Zenodo repository.

Alexander Garcia, Leyla Jael Castro, Dietrich Rebholz-Schuhmann, Olga Giraldo

Publication date: 15 March 2019

Copyright license: Creative Commons Attribution 4.0 International

Description

Biotea-2-Bioschemas mapps Biotea model to schema.org following the approach proposed by Bioschemas. Here we present the test data used in Biotea GitHub pages, corresponding to 2596 PubMed Open Access (PMC-OA) subset publications together with the software used to render schema.org markup. Date deposited includes (i) publications retrieved from PMC-OA API, i.e., full text in JATS/XML, (ii) ontology terms recognized in the abstracts and obtained from the NCBO Annotator, i.e., semantic annotations, and (iii) the same annotations following the PubAnnotation format. Software deposited includes (i) biotea-bioschemas-metadata which parses JATS/XML files and creates Bioschemas markup including metadata, abstract and references, (ii) biotea-bioschemas-annotations which parses PubAnnotation annotations and creates Bioschemas markup, and (iii) biotea-bioschemas-showcase which uses the other two in order to display markup in a graphical basic way and render it as a script element in the HTML following the JSON-LD format. The corresonding GitHub repositories are: (i) https://github.com/biotea/biotea-bioschemas-metadata, (ii) https://github.com/biotea/biotea-bioschemas-annotations, and (iii) https://github.com/biotea/biotea-bioschemas-showcase. Biotea-2-bioschemas can be seen in action at http://biotea.github.io/bioschemas/

This page was built for dataset: Biotea-2-Bioschemas test data