Three-dimensional chromatin architecture of early-stage mouse embryos reconstructed via recurrence plots

DOI10.5281/zenodo.6658789Zenodo6658789MaRDI QIDQ6694408FDOQ6694408

Dataset published at Zenodo repository.

Yuki, Hiroki, Yukiko, Yoshito Hirata

Publication date: 11 January 2025

Description

We have previously developed the Recurrence Plot-Based Reconstruction (RPR) method for reconstructing three dimensional (3D) genomic structure from Hi-C data of single haploid cellsand diploid cells.Here we used the RPR method to analyzing published scHi-C data of diploid cells derived from early-stage F1 hybrid embryos. As a proof-of-concept for understanding of global developmental changes in chromosomal architecture of early stage embryos.Processed single cell Hi-C (scHi-C) data of early stage mouse embryos were obtained from Collombet et al.(GSE129029).

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