Data of: Imputation-free reconstructions of three-dimensional chromosome architectures in human diploid single-cells using allele-specified contacts

DOI10.5281/zenodo.6799487Zenodo6799487MaRDI QIDQ6694413FDOQ6694413

Dataset published at Zenodo repository.

Arisa Oda, Masanori Shiro, Chie Motono, Kunihiro Ohta, Yoshito Hirata

Publication date: 5 July 2022

Description

These files are results obtained inImputation-free reconstructions of three-dimensional chromosome architectures in human diploid single-cells using allele-specified contactsby Yoshito Hirata, Arisa H. Oda, Chie Motono, Masanori Shiro Kunihiro Ohta. There are 33 files for the corresponding each reconstruction of three-dimensional chromosomone structuresfor each cell.There are 3D structures for 15 GM cells and 18 PBMC cells, which are obtained from the single cell Hi-C data of Tan et al. Science (2018). For each file, there are 6 columns:The first column corresponds to the allele (0: maternal, 1: paternal)The second column corresponds to the chromosome (1-22: chromosome's number, 23: X, 24: Y)The third column corrsponds to the base point.The fourth column, the fifth column and the sixth column correspond to x-, y-, and z-axes of our reconstruction.

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