The interkingdom horizontal gene transfer in 44 early diverging fungi boosted their metabolic, adaptive and immune capabilities

DOI10.5281/zenodo.10649525Zenodo10649525MaRDI QIDQ6696015FDOQ6696015

Dataset published at Zenodo repository.

Paweł Górecki, Anna Muszewska, Michal Aleksander Ciach, Julia Pawłowska

Copyright license: Creative Commons Attribution 4.0 International

Description

Supplemental Material. The dataset includes all phylogenetic trees for supported and unsupported HGTs in NHX format. Maximum likelihood (ML) trees were inferred using IqTree [1] with automated model selection. The pipeline to detect horizontally transfered protein-encoding genes in a set of proteomes. 1. Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, von Haeseler A, et al. IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era. Mol Biol Evol. 2020;37: 15301534.

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