Simultaneous three-dimensional vascular and tubular imaging of whole mouse kidneys with X-ray µCT
DOI10.5281/zenodo.3899529Zenodo3899529MaRDI QIDQ6698004FDOQ6698004
Dataset published at Zenodo repository.
Udo Hetzel, Ngoc An le, Willy Kuo, Vartan Kurtcuoglu, Roland H. Wenger, Bernhard Spingler, Bert Müller, Anja Kipar, Georg Schulz
Publication date: 19 June 2020
Copyright license: Creative Commons Attribution 4.0 International
CT dataset of a mouse kidney injected with contrast agent XlinCA and scanned with 3.3 m voxel size. Detailed sample preparation and image acquisition protocols are published as Simultaneous three-dimensional vascular and tubular imaging of whole mouse kidneys with X-ray CT in Microscopy and Microanalysis. Segmentations of the vascular and tubular lumina along with the renal tissue are provided as masks. The three different segmented features were combined into a single dataset and encoded as different gray values: 0: Background 51: Tubules 204: Tissue 255: Blood vessels The Supplemental Video features a computer graphics visualization of the segmented masks. Blood vessel lumina are rendered in red, tissue in transparent blue and tubular lumina in yellow.
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