Honeybee lifetime tracking data 2019
DOI10.5281/zenodo.7298798Zenodo7298798MaRDI QIDQ6700612FDOQ6700612
Dataset published at Zenodo repository.
Jacob Davidson, Tim Landgraf, David M Dormagen, Michael L Smith, Iain D. Couzin, Benjamin Wild
Publication date: 7 November 2022
Copyright license: Creative Commons Attribution 4.0 International
Data from barcode-based tracking of honeybees during summer of 2019, taken in an observation hive located at University of Konstanz, Germany. See table of experiments and manipulations performed Associated GitHub repositories: https://github.com/jacobdavidson/bees_lifetimetracking_2019data https://github.com/jacobdavidson/bees_drones_2019data Data usage example is on Github File contents: 2019_Quantity_Dates_Cohorts_DaysLived.xlsx List and description of quantities contained in the single-day summary metrics, and the metrics calculated at shorter intervals (hour, 5 minute, 1 minute). Also lists day number definitions, cohort birthdates, and estimated days lived per bee. trajectories_000-019.zip, trajectories_020-039.zip, trajectories_040-059.zip, trajectories_060-079.zip, trajectories_080-099.zip, trajectories_100-114.zip Single-day hdf files, each containing x-y trajectory datain the form: daynum framenum uid x y camera theta daynum: the day number of the observation period. See Day numbers sheet in 2019_Quantity_Dates_Cohorts_DaysLived.xlsx framenum: using the camera frame rate of 3fps, the frame number with respect tothat particular day uid: the Unique ID of each bee x,y: pixel coordinate values of each bee. Conversion is 80 pixels/cm camera: which camera the bee was detected on: 0=exit side (with dance floor - shown at right in comb map images), 1=back side (show at left in comb map images) theta: orientation of the bee in the hive comb-contents-images2019.zip Comb content color-coded png image files, as well as pkl files for using the comb data type (seeData Usage Example) daydatamat.csv Summary behavioral metrics calculated for each tracked bee on each day of the experiment. See2018_Quantity_Descriptions.xlsx for full list and detail of quantities. Data is in the form: Age Day number Bee unique ID Cohort ID metric1 metric2 ... df_day1min.zip,df_day5min.zip,df_dayhour.zip Behavioral metrics calculated over different time intervals: 1 minute, 5 minute, or 1 hour divisions.See2018_Quantity_Descriptions.xlsx for full list and detail of quantities. Files are organized as a single .hdf file for each day. Each file contains data in the form: Per-hour data: Age Day number Bee unique ID Cohort ID Hour metric1 metric2 ... 5-minute or 1-minute data: Age Day number Bee unique ID Cohort ID timedivision metric1 metric2 ... dfxy_dayhour.zip x-y histogram data, calculated by using a 2cmx2cm grid and binning for each hour of each day. One file per day, and each file contains data in the form: Day number Bee unique ID Cohort ID Hour hist0 hist1 ... hist1434 Convert the flattened histogram structure into a shape of [41,35] in order to view as shown in the paper or in theData Usage Example
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