Spectral decomposition coefficients for spatiotemporal gene expression pattern identification in Bacillus subtilis swarm development
DOI10.5281/zenodo.8355669Zenodo8355669MaRDI QIDQ6702001FDOQ6702001
Dataset published at Zenodo repository.
Alasdair D. Hastewell, Jörn Dunkel, Knut Drescher, Dominic J. Skinner, Hannah Jeckel, Kazuki Nosho
Publication date: 18 September 2023
Copyright license: Creative Commons Attribution 4.0 International
Spectral decomposition coefficients, spatiotemporal gene expression pattern identification and multidimensional scaling coordinates of spatiotemporal transcriptomics data and image analysis results used to create Figure2 in the scientific article Simultaneous spatiotemporal transcriptomics and microscopy of Bacillus subtilis swarm development reveal cooperation across generations by the following authors:Hannah Jeckel*, Kazuki Nosho*, Konstantin Neuhaus, Alasdair D. Hastewell, Dominic J. Skinner, Dibya Saha, Niklas Netter, Nicole Paczia, Jrn Dunkel, Knut Drescher. The symbol * indicates an equal contribution. This data consists of two excel sheets, one for the transcriptomics data and one for image analysis results (physical properties). Genes were ranked according to a spatiotemporal information score defined in the publication described above. For each gene, its name and ID (derived from locus tag) are given as identifiers. For information of reference genome used for mapping and convention on how gene names are chosen, see https://drescherlab.org/data/swarm-transcriptome/. Other columns in the sheet represent the spatiotemporal information score, assigned spatiotemporal pattern number, decomposition coefficient, multidimensional scaling coordinates and gene function. Physical properties are measuredfrom short microscopy videos and defined in the publication mentioned above. This excel sheet contains property name, spatiotemporal information score, spectral decomposition coefficients and multidimensional scaling coordinates.
This page was built for dataset: Spectral decomposition coefficients for spatiotemporal gene expression pattern identification in Bacillus subtilis swarm development
