mGEMS synthetic mixed samples (Supplementary Table)

DOI10.5281/zenodo.3724144Zenodo3724144MaRDI QIDQ6702881FDOQ6702881

Dataset published at Zenodo repository.

Jukka Corander, Teemu Kallonen, Tommi Mäklin, Veli Mäkinen, Jarno Alanko, Antti Honkela

Publication date: 23 March 2020

Copyright license: Creative Commons Attribution 4.0 International

Description

Supplementary Table from the mGEMS publication, which contains the information about the synthetic mixed samples in the manuscript. The table contains the accession numbers of the isolate sequencing reads assigned to each mixed sample, their lineage assignments, as well as assembly statistics (total length, number of contigs, N50, L50) for both the isolate sequencing data (assembled with shovill v0.9.0) and the synthetic mixed samples processed with the mGEMS pipeline (mGEMS binner v0.1.1, Themisto v0.1.1, mSWEEP v1.3.2, and shovill v0.9.0).

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