Multiple Nuclei HeLa cell ground truth images with four labels (nuclear envelope, nucleus, rest of the cell, and background) for deep learning architecture training.
DOI10.5281/zenodo.6355622Zenodo6355622MaRDI QIDQ6705198FDOQ6705198
Dataset published at Zenodo repository.
Cefa Karabağ, Martin L. Jones, C. C. Reyes-Aldasoro
Publication date: 15 March 2022
Copyright license: Creative Commons Attribution 4.0 International
This is a data set that contains labelledHeLa cell images, indicating the four different classes - nuclear envelope, nucleus, rest of the cell, and background. Similar ground truth have been published for this data set, but in this case, multiple nuclei have been labelled, whilst previous ones only focused on the central cell (https://doi.org/10.5281/zenodo.3874949) Details of the imaging, preparation and segmentation have been published in: CefaKarabağ,Martin L.Jones,Christopher J.Peddie,Anne E.Weston,Lucy M.Collinson,Constantino CarlosReyes-Aldasoro. Segmentation and Modelling of the Nuclear Envelope of HeLa Cells Imaged with Serial Block Face Scanning Electron Microscopy.J. Imaging2019,5(9), 75;https://doi.org/10.3390/jimaging5090075 CefaKarabağ,Martin L.Jones,Christopher J.Peddie,Anne E.Weston,Lucy M.Collinson,Constantino CarlosReyes-Aldasoro. Semantic segmentation of HeLa cells: An objective comparison between one traditional algorithm and four deep-learning architectures, PLOS ONE, 2020; https://doi.org/10.1371/journal.pone.0230605 CefaKarabağ,Martin L.Jones, Constantino CarlosReyes-Aldasoro, Segmentation of the Plasma Membrane of HeLa Cells, J. Imaging 2021, 7(6), 93; https://doi.org/10.3390/jimaging7060093 Thedata setsare freely available through EMPIAR: http://dx.doi.org/10.6019/EMPIAR-10094 EMPIAR.
This page was built for dataset: Multiple Nuclei HeLa cell ground truth images with four labels (nuclear envelope, nucleus, rest of the cell, and background) for deep learning architecture training.
