Example Dataset for npstat: Population genetics from Pooled NGS data NPStat v1: User guide

DOI10.5281/zenodo.13364757Zenodo13364757MaRDI QIDQ6705799FDOQ6705799

Dataset published at Zenodo repository.

Sara Guirao-Rico, Sebástian E. Ramos-Onsins

Publication date: 23 August 2024

Copyright license: Creative Commons Attribution 4.0 International

Description

Example Dataset for npstat to test the program and the different options. The example dataset contains a pileup file with sequences of of the 2L chromosome from fifteen pooled inbreed individuals of Drosophila melanogaster (doi: 10.1038/nature10811). The dataset also contains the sequence reference of the 2L chromosome in fasta format, an outgroup sequence in fasta format of D. yakuba (SRR26246471), a GFF3 annotation file and a file with a brief list of selected SNPs to be analyzed.

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