A KL Divergence-Based Loss for In Vivo Ultrafast Ultrasound Image Enhancement with Deep Learning: Dataset (2/6)
DOI10.5281/zenodo.10608742Zenodo10608742MaRDI QIDQ6706917FDOQ6706917
Dataset published at Zenodo repository.
Publication date: 2 February 2024
Copyright license: Creative Commons Attribution 4.0 International
This dataset contains a collection of ultrafast ultrasound acquisitions from nine volunteers and the CIRS 054G phantom. For a comprehensive understanding of the dataset, please refer to the paper: Vials, R.; Thiran, J.-P.A KL Divergence-Based Loss for In Vivo Ultrafast Ultrasound Image Enhancement with Deep Learning.J.Imaging 2023,9,256.https://doi.org/10.3390/jimaging9120256. Please cite the original paper when using this dataset. Due to data size restriction, the dataset has been divided into six subdatasets, each one published into a separate entry in Zenodo. This repository contains subdataset2. Structure In Vivo Data Number of Acquisitions:20,000 Volunteers:Nine volunteers File Structure:Each volunteer's data is compressed in a separate zip file. Note:For volunteer 1, due to a higher number of acquisitions, data for this volunteer is distributed across multiple zip files, each containing acquisitions from different body regions. Regions : Abdomen: 6599 acquisitions Neck: 3294 acquisitions Breast: 3291 acquisitions Lower limbs: 2616 acquisitions Upper limbs: 2110 acquisitions Back: 2090 acquisitions File Naming Convention: Incremental IDs from acquisition_00000 to acquisition_19999. In Vitro Data Number of Acquisitions:32 from CIRS model 054G phantom File Structure:The in vitro data is compressed in the cirs-phantom.zip file. File Naming Convention:Incremental IDs from invitro_00000 to invitro_00031. CSV Files Two CSV files are provided: invivo_dataset.csv : Contains a list of all in vivo acquisitions. Columns: id, path, volunteer id, body region. invitro_dataset.csv : Contains a list of all in vitro acquisitions. Columns: id, path Zenodo dataset splits and files The dataset has been divided into six subdatasets, each one published in a separate entry on Zenodo. The following table indicates, for each file or compressed folder, the Zenodo dataset split where it has been uploaded along with its size. Each dataset split is named "A KL Divergence-Based Loss for In Vivo Ultrafast Ultrasound Image Enhancement with Deep Learning: Dataset (ii/6)", where ii represents the split number. This repository contains the 2nd split. File name Size Zenodo subdataset number invivo_dataset.csv 995.9 kB 1 invitro_dataset.csv 1.1 kB 1 cirs-phantom.zip 418.2 MB 1 volunteer-1-lowerLimbs.zip 29.7 GB 1 volunteer-1-carotids.zip 8.8 GB 1 volunteer-1-back.zip 7.1 GB 1 volunteer-1-abdomen.zip 34.0 GB 2 volunteer-1-breast.zip 15.7 GB 2 volunteer-1-upperLimbs.zip 25.0 GB 3 volunteer-2.zip 26.5 GB 4 volunteer-3.zip 20.3 GB 3 volunteer-4.zip 24.1 GB 5 volunteer-5.zip 6.5 GB 5 volunteer-6.zip 11.5 GB 5 volunteer-7.zip 11.1 GB 6 volunteer-8.zip 21.2 GB 6 volunteer-9.zip 23.2 GB 4 Normalized RF Images Beamforming: Depth from 1 mm to 55 mm Width spanning the probe aperture Grid: 𝜆/8 𝜆/8 Resulting images shape: 1483 1189 Two beamformed RF images from each acquisition: Input image: single unfocused acquisition obtained from a single plane wave (PW) steered at 0 (acquisition-xxxx-1PW) Target image: coherently compounded image from 87 PWs acquisitions steered at different angles (acquisition-xxxx-87PWs) Normalization: The two RF images have been normalized To display the images: Perform the envelop detection (to obtain the IQ images) Log-compress (to obtain the B-mode images) File Format:Saved in npy format, loadable using Python andnumpy.load(file). Training and Validation Split in the paper For the volunteer-based split used in the paper: Training set: volunteers 1, 2, 3, 6, 7, 9 Validation set: volunteer 4 Test set: volunteers 5, 8 Images analyzed in the paper Carotid acquisition (from volunteer 5): acquisition_12397 Back acquisition (from volunteer 8): acquisition_19764 In vitro acquisition: invitro-00030 License This dataset is licensed under theCreative Commons Attribution 4.0 International License (CC BY 4.0). Please cite the original paper when using this dataset: Vials, R.; Thiran, J.-P. A KL Divergence-Based Loss for In Vivo Ultrafast Ultrasound Image Enhancement with Deep Learning. J. Imaging 2023, 9, 256. DOI: 10.3390/jimaging9120256 Contact For inquiries or issues related to this dataset, please contact: Name: Roser Vials Email: roser.vinalsterres@epfl.ch
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