Training Images for "ImmuNet" Convolutional Neural Network
DOI10.5281/zenodo.8084976Zenodo8084976MaRDI QIDQ6707949FDOQ6707949
Dataset published at Zenodo repository.
Kiek Verrijp, Shabaz Sultan, I. Jolanda M. de Vries, Carl G. Figdor, Lieke L. van der Woude, Johannes Textor, Evgenia Martynova, Sandra van Wilpe, Franka Buytenhuijs, Mark A.j. Gorris
Publication date: 2 November 2021
Copyright license: Creative Commons Attribution 4.0 International
This dataset contains annotations and annotated images for the AgarCyto samples used in thismanuscript: A Segmentation-Free Machine Learning Architecture for Immune Land-scape Phenotyping in Solid Tumors by Multichannel Imaging. ShabazSultan,Mark A. J.Gorris,Lieke L.van der Woude,FrankaBuytenhuijs,EvgeniaMartynova,Sandravan Wilpe,KiekVerrijp,Carl G.Figdor,I. Jolanda M.de Vries,JohannesTextor bioRxiv2021.10.22.464548;doi:https://doi.org/10.1101/2021.10.22.464548 The .tar.gz file contains several multichannel images stored as TIFF files, and arranged in a folder structure that is convenient for matching the files to the annotations provided in the .json.gz file.We also provide an .h5 file that contains the final trained network that was used to generate the figures in this manuscript. Further information on the data can be found in the manuscript cited above. Instructions on how to use the annotations and the code can be found on our GitHub page at:https://github.com/jtextor/immunet
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