MTClass: Identification and annotation of multi-phenotype cis-eQTLs using machine learning

DOI10.5281/zenodo.10911584Zenodo10911584MaRDI QIDQ6708332FDOQ6708332

Dataset published at Zenodo repository.

Ronnie Li, Zhaohui S. Qin

Publication date: 11 October 2024

Copyright license: Creative Commons Attribution 4.0 International

Description

This dataset contains the aggregated results from three iterations of MTClass. Brief descriptions of the file names are below: multi-tissue.zip: Multi-tissue study containing the 9-tissue, 13 brain tissue, and 48-tissue results from MTClass, MultiPhen, and MANOVA multi-exon.zip: Multi-exon study containing the multi-exon results from the 13 individual brain tissues (MTClass, MultiPhen, and MANOVA for each tissue) 2D_exon_tissue.zip: Multi-tissue/multi-exon combined eQTL study, done in 9 tissues using multi-layer perceptron. MTClass was only run once on this dataset due to the relatively higher computational burden. PsychENCODE_isoQTL.zip: Multi-isoform eQTL study, done in human prefrontal cortex using PsychENCODE data. OneK1K_scRNAseq.zip: Multi-cell-type eQTL study, done using scRNA-seq data from the OneK1K cohort.

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