Data for Embryo-scale epithelial buckling forms a propagating furrow that initiates gastrulation
DOI10.5281/zenodo.6506336Zenodo6506336MaRDI QIDQ6709199FDOQ6709199
Dataset published at Zenodo repository.
Philippe Marmottant, Alexandre Torzynski, Jocelyn Étienne, Grégoire Malandain, Claire M Lye, Julien Fierling, Matteo Rauzi, Barthélémy Delorme, Alphy John, Guy B Blanchard, Anna Popkova, Catherine Quilliet, Bénédicte Sanson
Publication date: 29 April 2022
Copyright license: Creative Commons Attribution 4.0 International
This is the data and code corresponding to Embryo-scale epithelial buckling forms a propagating furrow that initiates gastrulation, Nature Comms. 13:3348. Code The file Surface_Evolver_script.txt is ... the Surface Evolver script, use with Ken Brakkes Surface Evolver Data sources The figure panels are based on the datafiles listed below, visualised either with Ken Brakkes Surface Evolver or with gnuplot 5. When the datafiles listed do not contain the primary data, they contain a commented last line which is the command line for the softwaredatamerge to generate it from other datafiles found in the Data_sources subdirectory. Figure 1 Fig. 1c : data provided in data_for_Fig_1g.tsv Fig. 1f : visualisation from Surface Evolver file Young100dixPoisson000Step013.dmp Fig. 1g : myosin_profile_us_only.pdf generated with gnuplot script myosin_profile.plot Figure 2 Fig. 2a : strain_profile_100_0_time_013.pdf generated with gnuplot script strain_profile.plot Fig. 2b : visualisation from Surface Evolver file Young100dixPoisson000Step013.dmp Fig. 2c : stress_profile_100_0_time_013.pdf gnuplot script stress_profile.plot Fig. 2d : visualisation from Surface Evolver file Young100dixPoisson000Step063.dmp Figure 3 Fig. 3a : myosin_area.pdf generated with gnuplot script area_AP_DV_paper.plot Fig. 3b : area_stripes_t=-1.pdf generated with gnuplot script area_AP_DV_paper.plot Fig. 3c : only_AP_stripes_t=-1.pdf generated with gnuplot script area_AP_DV_paper.plot Fig. 3d : only_DV_stripes_t=-1.pdf generated with gnuplot script area_AP_DV_paper.plot Fig. 3e : visualisation from Surface Evolver file Young100dixPoisson000Step013.dmp Young100dixPoisson000Step063.dmp Young100dixPoisson000Step163.dmp Young100dixPoisson000Step213.dmp Figure 4 Fig. 4a : visualisation from Surface Evolver file Young100dixPoisson000Step213.dmp Fig. 4b : furrow_propagation.pdf generated with gnuplot script furrow_propagation.plot Fig. 4c : rate_of_furrowing_t=3.pdf generated with gnuplot script furrow_propagation.plot Fig. 4f : curvature.pdf generated with gnuplot script curvature.plot Figure 5 Fig. 5a : visualisation from Surface Evolver file Young100dixPoisson000Step013.dmp Young100dixPoisson000Step063.dmp Young100dixPoisson000Step113.dmp Young100dixPoisson000Step163.dmp Young100dixPoisson000Step213.dmp Fig. 5b : visualisation from Surface Evolver file Young100dixPoisson000Step013.dmp Young100dixPoisson000Step140.dmp Fig. 5d : stress_laserablations_profile_100_0_time_063.pdf generated with gnuplot script stress_profile_for_laser_ablations.plot Fig. 5e : laser_ablation_recoil.pdf generated with gnuplot script laser_ablation_recoil.plot Supp Figure 1 Fig. S1a : time_profile_FINI_100_0.pdf generated with gnuplot script time_profile_stress.plot Fig. S1b : visualisation from Surface Evolver file Young100dixPoisson000Step013.dmp Fig. S1d : visualisation from Surface Evolver file Young100dixPoisson000Step063.dmp Fig. S1e : strain_profile_100_0_time_063.pdf gnuplot script strain_profile.plot Fig. S1f : stress_profile_100_0_time_063.pdf gnuplot script stress_profile.plot Supp Figure 1 Fig. S2a : area_stripes_time_evolution.pdf generated with gnuplot script area_AP_DV_paper.plot Fig. S2b : area_stripes_time_evolution_SPIM.pdf generated with gnuplot script area_AP_DV_paper.plot Supp Figure 3 Fig. S3a : visualisation from Surface Evolver file Young100dixPoisson000Step213.dmp Fig. S3c : AP_binned_strain.pdf generated with gnuplot script AP_binned_strain.plot Fig. S3d : furrow_propagation_experimental.pdf generated with gnuplot script plot_furrow.plot Fig. S3e : curvature_DV_indiv.pdf generated with gnuplot script curvature.plot Fig. S3f : depth_Gastrulation_ordi_Wild_Type_STITCHED_100_0.pdf generated with gnuplot script depth.plot
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