Supporting Information for the Journal Article "High-throughput ab initio reaction mechanism exploration in the cloud with automated multi-reference treatment"
DOI10.5281/zenodo.7568996Zenodo7568996MaRDI QIDQ6710321FDOQ6710321
Dataset published at Zenodo repository.
Karol Kowalski, Hongbin Liu, Leopold Talirz, Christopher J. Stein, Bo Peng, Matthias Troyer, Jan P. Unsleber, Adam Grofe, Maximilian Mörchen, Markus Reiher, Dave Wecker, Ajay Panyala, Thomas Weymuth
Publication date: 25 January 2023
Copyright license: Creative Commons Attribution 4.0 International
This dataset contains the supporting information for the journal article High-throughput ab initio reaction mechanism exploration in the cloud with automated multi-reference treatment. It consists of two files: structures.json, containing 3335 unique structures found in the exploration, and energies.json, containing 2227 elementary steps and its energies found in the exploration In the file structures.json, the following keys are used to characterize a structure: _id: the ID of the structure nAtoms: the total number of atoms in the structure atoms: the XYZ coordinates of the atoms in atomic units charge: the total charge of the structure multiplicity: the spin multiplicity 2S+1 of the structure label: the position of the structure on the minimum energy pathway In the file energies.json, there are two major fields: structures and reactions. In the field structures, the keys are: id: the ID of structure (can be linked to XYZ coordinates in structures.json) label: the position of the structure on the minimum energy pathway energy_dft: PBE-D3BJ/def2-SVP total energy in atomic units energy_hf: HF/cc-pVDZ total energy in atomic units energy_ccsd: CCSD/cc-pVDZ total energy in atomic units energy_ccsd_t: CCSD(T)/cc-pVDZ total energy in atomic units energy_gibbs_correction: PBE-D3BJ/def2-SVP Gibbs free energy correction in atomic units In the field reactions, the keys are: id: the ID of the elementary step lhs: the structure IDs on the left-hand side of the reaction rhs: the structure IDs on the right-hand side of the reaction type: regular or barrierless barrierless: binary key to indicate whether the elementary step has a barrier ts: ID of the transition state structure reaction: the ID of the reaction to which the elementary step belongs Due to the nature of exploration, certain structures can be explored from multiple elementary steps. Therefore, duplicated structures are common in the reaction exploration. In structures.json, we de-duplicated the structures and only list the unique ones. The coordinates (in bohr) and global attributes like spin multiplicity and charge are provided. In energies.json, each step represents an elementary step. 1260 of the steps are barrierless, while 967 of the steps have a barrier. The structures keys cited in lhs, rhs, and ts are before de-duplication. The id in each structure key points to the unique, de-duplicated structure in structures.json. The main catalytical pathways (figure 9) can be found in the dataset with the following elementary_step IDs: 62066d2fb8e290f3afb607e2 6206704db8e290f3afb607e3 62067db7b8e290f3afb607e4 620a6d49b8e290f3afb607e5 620a6dbeb8e290f3afb607e6 620a6e2fb8e290f3afb607e7 620a6e78b8e290f3afb607e8 620a7f01b8e290f3afb607e9 620a7f54b8e290f3afb607ea
This page was built for dataset: Supporting Information for the Journal Article "High-throughput ab initio reaction mechanism exploration in the cloud with automated multi-reference treatment"
