Data from: Rhizosphere bacterial community composition depends on plant species identity and soil legacy effects
DOI10.5281/zenodo.1309178Zenodo1309178MaRDI QIDQ6716763FDOQ6716763
Dataset published at Zenodo repository.
Bernhard Schmid, Gerlinde de Deyn, Cameron Wagg, Marc William Schmid, Terhi Hahl, Sofia Julia van Moorsel
Publication date: 11 July 2018
Copyright license: Creative Commons Attribution 4.0 International
This record contains supplementary information for the article Rhizosphere bacterial community composition depends on plant diversity legacy in soil and plant species identity. Supplemental Table S1. The table contains the annotation for all the samples sequenced and analyzed. Supplemental Table S2. The table contains all primer sequences used in the study. Supplemental Table S3. The zip-file contains a table with the taxonomic annotation of the operational taxonomic units (OTUs) identified in the study. Supplemental Table S4. The zip-file contains a table with sequence counts of the operational taxonomic units (OTUs) identified in the study. Supplemental Table S5. The workbook contains a sheet with the number of operational taxonomic units (OTUs) exhibiting differential abundance in any of the contrasts tested in this study. Note that down/up indicates whether the OTU was less (down) or more (up) abundant in the first group of the contrast. For example, given the contrast PH_mix_vs_mon_, down corresponds to higher abundance in the pots from the monoculture plant history. Conversely, up refers to higher abundance in the pots from the mixed culture plant history. In addition, the workbook contains one sheet per contrast with the logBaseMean (log2 of the average normalized abundance across all samples), the logFC (log2 of the fold-change), the P-value, and the adjusted P-value (FDR). Only OTUs with a P-value = 0.05 or an adjusted P-value (FDR) = 0.1 are given. Supplemental Table S6. The table contains the number of bacterial OTUs annotated with a given bacterial phylum. Supplemental Table S7. The table contains all phyla tested for enrichment/depletion in the set of OTUs with an increased abundance in monoculture and mixed culture soils respectively. Total counts (all OTUs) corresponds to the total number of all OTUs annotated with a given phyla (reference set). Observed corresponds to the number of OTUs annotated with a given phyla in the set OTUs with increased abundance in monoculture/mixed culture soils (test set). Expected gives the number of OTUs which would be expected to be annotated with a given phyla if the test set were randomly sampled from the reference set. Supplemental File S1. The zip-file contains a fasta file with the 10205 OTU sequences identified in the study.
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