CATH Structural domains in AlphaFold2 models for 21 model organisms
DOI10.5281/zenodo.7404988Zenodo7404988MaRDI QIDQ6718879FDOQ6718879
Dataset published at Zenodo repository.
Vamsi Nallapareddy, Vaishali Waman, Clemens Rauer, Su Datt Lam, Sameer Velankar, Christine Orengo, Stephanie Kim, Nicola Bordin, Neeladri Sen, Maria Littmann, Martin Steinegger, Michael Heinzinger, Ian Sillitoe, Burkhard Rost
Publication date: 13 July 2022
Copyright license: Creative Commons Attribution 4.0 International
CATH structural domain assignments for AlphaFold2 models in 21 model organisms. The tablecath-v4_3_0.alphafold-v2.2022-11-22.tsv contains the domain assignments with information on model quality, CATH superfamily and Class, organism, average pLDDT, percentage of residues not in secondary structure, globularity and domain origin (CATH-PDB, CATH-HMM,Pfam,newfams). Organisms included: Arabidopsis thaliana Caenorhabditis elegans Candida albicans Danio rerio Dictyostelium discoideum Drosophila melanogaster Escherichia coli Glycine max Homo sapiens Leishmania infantum Methanocaldococcus jannaschii Mus musculus Mycobacterium tuberculosis Oryza sativa Plasmodium falciparum Rattus norvegicus Saccharomyces cerevisiae Schizosaccharomyces pombe Staphylococcus aureus Trypanosoma cruzi Zea mays The archive cath-v4_3_0.alphafold-v2.2022-11-22.by_superfamily.tgz contains all domains assigned by CATH in the dataset as PDB files, divided by superfamily. Alternatively, if youre interested in a particular organism, an individual tarball containing all CATH domains as PDB files is available e.g. cath-v4_3_0.alphafold-v2.2022-11-22.arabidopsis_thaliana.tgz All domains included in this release are named as af_[UniProt_ID]_[start]_[stop].
This page was built for dataset: CATH Structural domains in AlphaFold2 models for 21 model organisms
