SQANTI-SIM: a simulator of controlled transcript novelty for lrRNA-seq benchmark

DOI10.5281/zenodo.10160381Zenodo10160381MaRDI QIDQ6719527FDOQ6719527

Dataset published at Zenodo repository.

Francisco José Pardo Palacios, Tianyuan Liu, Ana Conesa, Jorge Mestre

Publication date: 20 November 2023

Copyright license: Creative Commons Attribution 4.0 International

Description

In this repository, we present the PacBio and ONT simulated datasets used for benchmarking transcriptome reconstruction tools, as evaluated in the manuscript titled "SQANTI-SIM: a simulator of controlled transcript novelty for lrRNA-seq benchmark". The dataset includes simulated long reads, short reads, CAGE peaks, and a reduced reference annotation. Additionally, we have included reconstructed transcriptomes from each method, along with SQANTI3 output files. The SQANTI-SIM software can be accessed on GitHub at the following URL: https://github.com/ConesaLab/SQANTI-SIM.

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