Supporting Dataset for "Impacts of Degradation on Water, Energy, and Carbon Cycling of the Amazon Tropical Forests"
DOI10.5281/zenodo.3634131Zenodo3634131MaRDI QIDQ6720103FDOQ6720103
Dataset published at Zenodo repository.
Damien Bonal, Kevin Bowman, Scott Saleska, Douglas Morton, Sassan Saatchi, Paulo Brando, Benoît Burban, Maiza Nara dos-Santos, Géraldine Derroire, Marcos Longo, S. E. Trumbore, Paul Moorcroft, Grégoire Vincent, Michael Keller
Publication date: 2 February 2020
Copyright license: Creative Commons Attribution 4.0 International
This data set is a supplement for: Longo, M., S. S. Saatchi, M. Keller, K. W. Bowman, A. Ferraz, P. R. Moorcroft, D. Morton, D. Bonal, P. Brando, B. Burban, G. Derroire, M. N. dos-Santos, V. Meyer, S. R. Saleska, S. Trumbore, and G. Vin- cent, 2020: Impacts of degradation on water, energy, and carbon cycling of the Amazon tropical forests. J. Geophys. Res.-Biogeosci., 125 (8), e2020JG005 677, doi:10.1029/2020JG005677. This data set contains the following files (which should be all downloaded and uncompressed in the same root directory): 00_SiteLidar.zip R scripts to process forest inventory plots and Airborne LiDAR point clouds. Sub-directories contains a directory Template, which should be copied for each site for which data are to be processed. 01_LidarSynthesis.zip R scripts to fit the statistical models of aggregated properties, and to evaluate both the statistical model and the prediction of Airborne LiDAR profiles to be used to initialize ED-2.2. 02_model_eval.zip R scripts to compare the ED-2.2 model output and evaluate the model against tower observations. 03_degrad_mtr R scripts to visualize the ED-2.2 simulation results. InputData Miscellaneous data to be used by the scripts. Util Additional R scripts Rsc Mostly R functions, whichmay be called by other R scripts OutsideLAS List of plots that were not fully overlapped by the Airborne LiDAR surveys GenMERRA2_ED2 Utility scripts to process MERRA-2 to generate the met drivers needed by ED-2.2 GenMSWEP2_ED2 Utility scripts to process MSWEP-2.2 to generate the met drivers needed by ED-2.2 ED2IN_Config list of ED2IN files used in the runs. To see the input data used for this analysis, load any of the objects available in 01_LidarSynthesis/01_eval_multivar, and look for the following structures: List of variables and units of data structure census1, rlidar1, and tchdat1. Variable Structure Description Units identifier census1, rlidar1, tchdat1 Plot identifier. This always has the site identifier (see below), the area within each site, the nominal year of the campaign, the unique sub-plot ID (Pxx_Byy for rectangular plots, and Txx_Pyy for long transects) iata census1, rlidar1,tchdat1 Site identifier: 115: Km 115 of BR-163 highway, PA, BRA ana:Anamb, PA, BRA and: Fazenda Andiroba, PA, BRA bon:Fazenda Bonal, AC, BRA cau:Fazenda Cauaxi, PA, BRA duc:Reserva Ducke, AM, BRA fc2: Feliz Natal (zone C, area 2), MT, BRA fd1: Feliz Natal(zone D, area 1), MT, BRA fd2: Feliz Natal(zone D, area 2), MT, BRA fd3: Feliz Natal(zone D, area 3), MT, BRA fn2:Feliz Natal (long transect 2), MT, BRA fna:Feliz Natal (zone A), MT, BRA fst:Sarac-Taquera National Forest, PA,BRA gf1:Paracou (Guyaflux plots), GUF gf2:Paracou (Logging experiment plots), GUF hum: Fazenda Humait, AC, BRA jm2:Jamari National Forest (area 2), RO, BRA jm3:Jamari National Forest (area 3), RO, BRA par:Fazenda Nova Neonita, PA, BRA sbe: local census1, rlidar1,tchdat1 Region identifier (used for regional cross-validation): bte: Belterra, PA, BRA duc:Manaus (Reserva Ducke), AM, BRA fst:Sarac-Taquera National Forest, PA, BRA fzn:Feliz Natal, MT, BRA gyf:Paracou, GUF jam: Jamari National Forest, RO, BRA prg: Paragominas, PA, BRA rib:Rio Branco, AC, BRA sfx:So Flix do Xingu, PA, BRA tan:Tanguro, MT, BRA sbe: Southeastern Belterra, PA, BRA sx1: So Flix do Xingu (area 1), PA, BRA sx2: So Flix do Xingu (area 2), PA, BRA tac:Tom-Au, PA, BRA tal: Fazenda Talism, AC, BRA tn1: Fazenda Tanguro (Sustainable Landscapes transects), MT, BRA tn2: Fazenda Tanguro (fire experiment transects), MT, BRA tp1: Tapajs National Forest, PA, BRA tp2:So Jorge (area 2), PA, BRA tp3:So Jorge (area 3), PA, BRA poi census1, rlidar1,tchdat1 Nominal size of each plot when census1, rlidar1,tchdat1 Date of measurement col census1, rlidar1,tchdat1 Colour associated with plot (for plotting only) pch census1, rlidar1,tchdat1 Symbol associated with plot (for plotting only) dist.key census1, rlidar1,tchdat1 Disturbance flag: bnm: Burnt multiple times bno: Burnt once cvl: Conventional logging int: Intact (minimally disturbed) forest lbn: Logged and burnt once lth:Logged and thinned ril: Reduced-impact logging sbn: Secondarygrowth then burnt sec:Secondary growth ukn:Unknown/Unclassified dist.age census1, rlidar1,tchdat1 Age since last disturbance yr dist.col census1, rlidar1,tchdat1 Colour associated with disturbance (for plotting only) dist.pch census1, rlidar1,tchdat1 Symbol associated with disturbance (for plotting only) agb.std census1 Above-ground biomass of individuals with DBH 10 cm kgC m2 ba.std census1 Basal area of individuals with DBH 10 cm cm2 m2 lai.std census1 Potential (allometry-based) leaf area index of individuals with DBH 10 cm m2 m2 nplant.std census1 Stem number density of individuals with DBH 10 cm m2 elev.mean rlidar1 Mean elevation of point cloud return distribution (all returns) m elev.sdev rlidar1 Standard deviation of point cloud return distribution (all returns) m elev.skew rlidar1 Skewness of point cloud return distribution (all returns) m elev.kurt rlidar1 Kurtosis of point cloud return distribution (all returns) m elev.p01 rlidar1 1stpercentile of the point cloud return distribution (all returns) m elev.p05 rlidar1 5thpercentile of the point cloud return distribution (all returns) m elev.p10 rlidar1 10thpercentile of the point cloud return distribution (all returns) m elev.p25 rlidar1 25thpercentile of the point cloud return distribution (all returns) m elev.p50 rlidar1 50thpercentile (median) of the point cloud return distribution (all returns) m elev.p75 rlidar1 75thpercentile of the point cloud return distribution (all returns) m elev.p90 rlidar1 90thpercentile of the point cloud return distribution (all returns) m elev.p95 rlidar1 95thpercentile of the point cloud return distribution (all returns) m elev.p99 rlidar1 99thpercentile of the point cloud return distribution (all returns) m elev.iqr rlidar1 Interquartile range of the point cloud return distribution (all returns) m elev.max rlidar1 Maximum of the point cloud return distribution (all returns) m fcan.elev.1.0.to.2.5.m rlidar1 Fraction of returns between 1.0 and 2.5 m fraction [0-1] fcan.elev.2.5.to.5.0.m rlidar1 Fraction of returns between 2.5 and 5.0 m fraction [0-1] fcan.elev.5.0.to.7.5.m rlidar1 Fraction of returns between 5.0 and 7.5 m fraction [0-1] fcan.elev.7.5.to.10.0.m rlidar1 Fraction of returns between 7.5 and 10.0 m fraction [0-1] fcan.elev.10.0.to.15.0.m rlidar1 Fraction of returns between 10.0 and 15.0 m fraction [0-1] fcan.elev.15.0.to.20.0.m rlidar1 Fraction of returns between 15.0 and 20.0 m fraction [0-1] fcan.elev.20.0.to.25.0.m rlidar1 Fraction of returns between 20.0 and 25.0 m fraction [0-1] fcan.elev.25.0.to.30.0.m rlidar1 Fraction of returns between 25.0 and 30.0 m fraction [0-1] fcan.elev.above.1.0.m rlidar1 Fraction of returns above 1.0 m fraction [0-1] fcan.elev.above.2.5.m rlidar1 Fraction of returns above 2.5 m fraction [0-1] fcan.elev.above.5.0.m rlidar1 Fraction of returns above 5.0 m fraction [0-1] fcan.elev.above.7.5.m rlidar1 Fraction of returns above 7.5 m fraction [0-1] fcan.elev.above.10.0.m rlidar1 Fraction of returns above 10.0 m fraction [0-1] fcan.elev.above.15.0.m rlidar1 Fraction of returns above 15.0 m fraction [0-1] fcan.elev.above.20.0.m rlidar1 Fraction of returns above 20.0 m fraction [0-1] fcan.elev.above.25.0.m rlidar1 Fraction of returns above 25.0 m fraction [0-1] fcan.elev.above.30.0.m rlidar1 Fraction of returns above 30.0 m fraction [0-1] ztch tchdat1 Mean top canopy height (0.25ha average from 1-m pixels) m
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