CATH-KinFams: CATH Protein Kinase classification alignments and Hidden Markov Models
DOI10.5281/zenodo.7575924Zenodo7575924MaRDI QIDQ6720429FDOQ6720429
Dataset published at Zenodo repository.
Aurelio A. Moya-Garcia, Tolulope Adeyelu, Marta Sadlej, Christine Orengo, Ian Sillitoe, Vaishali Waman, Nicola Bordin
Publication date: 11 January 2023
Copyright license: Creative Commons Attribution 4.0 International
CATH KinFams are protein kinase domain families classified according to functional similarity based on SDP. In this deposition we make available 2,210 KinFams sequence alignments alongside Hidden Markov Models built from them to be used with HMMER3. A concatenated library kinases_4.3-FF-seed.hmm is also available to scan against the whole KinFams dataset. The Zenodo deposition contains: kinfams-cath-4.3-seed-alignments.tar.gz - KinFams FASTA file alignments with headers UniProt_ID/start-stop i.e. A8XMX4/281-587 kinfams-cath-4.3-seed-hmms.tar.gz - HMMs for each individual KinFam and concatenated in a HMM library. kinfams-cath-4.3-seed-mda-strings - Multi-Domain-Architecture string assignment for each sequence in the KinFams dataset. human_kinfams_af2_models_cif.tar.gz - Chopped mmCIF files containing Human Kinases AlphaFold2 Models.
This page was built for dataset: CATH-KinFams: CATH Protein Kinase classification alignments and Hidden Markov Models
