Parameter estimation data repository - "Spatial discordances between mRNAs and proteins in the intestinal epithelium"
DOI10.5281/zenodo.5136420Zenodo5136420MaRDI QIDQ6725289FDOQ6725289
Dataset published at Zenodo repository.
Yishai Levin, Shalev Itzkovitz, Inna Averbukh, Alon Savidor, Yotam Harnik, Andreas Moor, Lisa Buchauer, Shani Ben-Moshe, Raya Eilam
Publication date: 25 July 2021
Copyright license: Creative Commons Attribution 4.0 International
The repository contains data associated with the estimation of protein translation and decay rates in the manuscript Spatial discordances between mRNAs and proteins in the intestinal epithelium. Specifically, it includes MCMC-chains approximating the posterior parameter distribution and figures showing the models fit to the data for each gene as well as a summary table of all fit results for two different models, the constant translation-rate model (constant_rate_model) and the declining translation-rate model (declining_rate_model) as explained in the manuscript. Code associated with the parameter estimation is available at https://github.com/LiBuchauer/spatial_MP_discordances .
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