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MaRDI QIDQ7371557CRANFDO

Authors George Hall, Sergi Castellano

Last update 7 September 2026

Copyright license GNU General Public License

Software version identifier PACKAGES.rds, 2.1.1, 2.2.0

Description

Detects regions of differential abundance in single-cell transcriptomic data by applying a pre-trained neural network model to the labels of each cell's nearest neighbours. Tests for both local and global differential abundance, controlling the false discovery rate with the Benjamini-Yekutieli procedure. The method is described in Hall and Castellano (2023) <doi:10.1101/2023.05.05.539427>.

Cites work

• Dawnn: single-cell differential abundance with neural networks

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