DeSciDe

MaRDI QIDQ7379093CRANFDO

Authors Cameron Douglas

Last update 9 April 2026

Copyright license MIT license, File License

Software version identifier 1.0.0, 1.0.1, 1.0.2, PACKAGES.rds, 1.0.3

Description

Designed for genomic and proteomic data analysis, enabling unbiased PubMed searching, protein interaction network visualization, and comprehensive data summarization. This package aims to help users identify novel targets within their data sets based on protein network interactions and publication precedence of target's association with research context based on literature precedence. Methods in this package are described in detail in: Douglas et al. (2025) <doi:10.1039/D5MO00160A>. Key functionalities of this package also leverage methodologies from previous works, such as: - Szklarczyk et al. (2023) <doi:10.1093/nar/gkac1000> - Winter (2017) <doi:10.32614/RJ-2017-066>.

Cites work

• DeSciDe: a tool for unbiased literature searching and gene list curation unveils a new role for the acidic patch mutation H2A E92K
• glmmTMB Balances Speed and Flexibility Among Packages for Zero-inflated Generalized Linear Mixed Modeling
• The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest

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