Deterministic and stochastic P systems for modelling cellular processes

DOI10.1007/S11047-009-9158-4MaRDI QIDQ5962070zbMATH OpenOpenAlexFDO

Authors Marian Gheorghe, Vincenzo Manca, Francisco J. Romero-Campero

Publication date 16 September 2010

Published in Natural Computing (Search for Journal in Brave)

Full work available at URL https://idus.us.es/handle//11441/86672

zbMATH Keywords

membrane computingmodelling of cellular processesP systemssynthetic biologysystems biology

Mathematics Subject Classification ID

Modes of computation (nondeterministic, parallel, interactive, probabilistic, etc.) (68Q10) Cell biology (92C37) Systems biology, networks (92C42)

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• Piecewise deterministic processes in biological models

Cites work

• A Hybrid Approach to Modeling Biological Systems
• Cellular modelling using P systems and process algebra
• Computing with membranes
• Discrete solutions to differential equations by metabolic P systems
• DYNAMICAL PROBABILISTIC P SYSTEMS
• scientific article; zbMATH DE number 5605059 (Why is no real title available?)
• scientific article; zbMATH DE number 1951578 (Why is no real title available?)
• Membrane Computing
• Metabolic P systems for biochemical dynamics
• MODULAR ASSEMBLY OF CELL SYSTEMS BIOLOGY MODELS USINGPSYSTEMS
• Quorum sensing P systems
• The metabolic algorithm for P systems: principles and applications

Cited in

(22)

• Modelling biological processes by using a probabilistic P system software
• BioMaxP: a formal approach for cellular ion pumps
• Coping with dynamical reaction system topologies using deterministic P modules: a case study of photosynthesis
• Membrane automata for modeling biomolecular processes
• Numerical P systems with Boolean condition
• Modeling membrane systems using colored stochastic Petri nets
• DYNAMICAL PROBABILISTIC P SYSTEMS
• DISCRETE NONDETERMINISTIC MODELING OF THE FAS PATHWAY
• MODULAR ASSEMBLY OF CELL SYSTEMS BIOLOGY MODELS USINGPSYSTEMS
• scientific article; zbMATH DE number 4039692 (Why is no real title available?)
• Small universal numerical P systems with thresholds for computing functions
• Modelling queues in transportation networks using P systems
• RESEARCH FRONTIERS OF MEMBRANE COMPUTING: OPEN PROBLEMS AND RESEARCH TOPICS
• Psim: A Computational Platform for Metabolic P Systems
• Hill Kinetics Meets P Systems: A Case Study on Gene Regulatory Networks as Computing Agents in silico and in vivo
• Membrane Computing
• Membrane Computing
• P versus B: P systems as a formal framework for controllability of Boolean networks
• Modeling Markov sources and hidden Markov models by P systems
• Cellular modelling using P systems and process algebra
• Seasonal variance in P system models for metapopulations
• Simulating FAS-induced apoptosis by using P systems

Describes a project that uses

Uses Software

• PRISM

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