Distributed and paged suffix trees for large genetic databases

DOI10.1007/3-540-44888-8_6MaRDI QIDQ3550828zbMATH OpenOpenAlexFDO

Authors Raphaël Clifford, Marek Sergot

Publication date 6 April 2010

Published in Combinatorial Pattern Matching (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/3-540-44888-8_6

Mathematics Subject Classification ID

Data structures (68P05) Database theory (68P15) Genetics and epigenetics (92D10)

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Cited in

(6)

• Database indexing for large DNA and protein sequence collections
• Distributed suffix trees
• Online Suffix Tree Construction for Streaming Sequences
• Map: searching large genome databases
• Constructing large suffix trees on a computational grid
• On-line construction of compact suffix vectors and maximal repeats

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