Entropic fluctuations in DNA sequences

DOI10.1016/J.PHYSA.2017.11.119MaRDI QIDQ2148393zbMATH OpenOpenAlexFDO

Authors Dimitrios Thanos, Wentian Li, Astero Provata

Publication date 23 June 2022

Published in Physica A (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.physa.2017.11.119

zbMATH Keywords

DNA sequencegenetic divergencerepetitive elementslocal Shannon entropylow complexity DNA

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Protein sequences, DNA sequences (92D20) Measures of information, entropy (94A17)

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Cites work

• scientific article; zbMATH DE number 44502 (Why is no real title available?)
• scientific article; zbMATH DE number 6107964 (Why is no real title available?)
• ENTROPY, TRANSINFORMATION AND WORD DISTRIBUTION OF INFORMATION-CARRYING SEQUENCES
• Exact and approximation algorithms for sorting by reversals, with application to genome rearrangement
• Information decomposition method to analyze symbolical sequences
• Statistics of local complexity in amino acid sequences and sequence databases
• Transforming cabbage into turnip
• Understanding long-range correlations in DNA sequences

Cited in

(13)

• A new method to study genome mutations using the information entropy
• scientific article; zbMATH DE number 910859 (Why is no real title available?)
• scientific article; zbMATH DE number 1445329 (Why is no real title available?)
• Entropy concepts and DNA investigations
• A maximum entropy principle for the distribution of local complexity in naturally occurring nucleotide sequences
• Statistical physics approaches to the complex Earth system
• Differentiating the protein coding and noncoding RNA segments of DNA using Shannon entropy
• The Minimum Entropy Mapping Spectrum of a DNA Sequence
• CROSSOVER FROM WHITE NOISE TO LONG RANGE CORRELATED NOISE IN DNA SEQUENCES AND WRITINGS
• Quantifying local randomness in human DNA and RNA sequences using Erdös motifs
• scientific article; zbMATH DE number 6746646 (Why is no real title available?)
• In the search for the low-complexity sequences in prokaryotic and eukaryotic genomes: How to derive a coherent picture from global and local entropy measures
• Entropy analysis of the DNA code dynamics in human chromosomes

Describes a project that uses

Uses Software

• LAGAN
• PipMaker
• RepeatMasker

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