Evolutionary decision rules for predicting protein contact maps

DOI10.1007/S10044-012-0297-3MaRDI QIDQ903121zbMATH OpenOpenAlexFDO

Authors Alfonso Eduardo Marquez-Chamorro, Gualberto Asencio-Cortes, Federico Divina, Jesus Salvador Aguilar-Ruiz

Publication date 5 January 2016

Published in PAA. Pattern Analysis and Applications (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s10044-012-0297-3

zbMATH Keywords

contact mapmulti-objective evolutionary computationprotein structure predictionresidue-residue contact

Mathematics Subject Classification ID

Multi-objective and goal programming (90C29) Approximation methods and heuristics in mathematical programming (90C59) Applications of mathematical programming (90C90) Biochemistry, molecular biology (92C40) Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20)

Recommendations

• On the reconstruction of three-dimensional protein structures from contact maps
• Advances in Neural Networks – ISNN 2005
• scientific article; zbMATH DE number 756196
• Evolutionary algorithms for protein structure prediction in lattice models
• Rule extraction from SVM for protein structure prediction

Cites work

• Novel generalized-\(\alpha \) methods for interfield parallel integration of heterogeneous structural dynamic systems
• Recent advances on the discretizable molecular distance geometry problem

Cited in

(3)

• On the reconstruction of three-dimensional protein structures from contact maps
• Hepatitis C virus contact map prediction based on binary encoding strategy
• Advances in Neural Networks – ISNN 2005

Describes a project that uses

Uses Software

• MULTICOM
• PSICOV
• NNcon
• AAindex
• I-TASSER
• FT-COMAR
• BLAST
• WEKA
• PSI-BLAST

This page was built for publication: Evolutionary decision rules for predicting protein contact maps

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q903121)