Finding predictive gene groups from microarray data

DOI10.1016/J.JMVA.2004.02.012MaRDI QIDQ1876985zbMATH OpenOpenAlexFDO

Authors Marcel Dettling, Peter Bühlmann

Publication date 16 August 2004

Published in Journal of Multivariate Analysis (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jmva.2004.02.012

zbMATH Keywords

Gene expressionDimension reductionPenalized logistic regressionSample classification

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Generalized linear models (logistic models) (62J12) Genetics and epigenetics (92D10)

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Cites work

• scientific article; zbMATH DE number 490141 (Why is no real title available?)
• Classification of gene microarrays by penalized logistic regression
• Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data
• Estimating the number of clusters in a data set via the gap statistic
• Reducing multiclass to binary: A unifying approach for margin classifiers
• Ridge Estimators in Logistic Regression
• Ridge Regression: Biased Estimation for Nonorthogonal Problems

Cited in

(22)

• The Kendall interaction filter for variable interaction screening in high dimensional classification problems
• A Robust Maximal F-Ratio Statistic to Detect Clusters Structure
• A diagonally scaled Newton-type proximal method for minimization of the models with nonsmooth composite cost functions
• Treelets -- an adaptive multi-scale basis for sparse unordered data
• Sparse regression with exact clustering
• Relative-error approximate versions of Douglas-Rachford splitting and special cases of the ADMM
• Boosting for high-dimensional linear models
• A clustering-based feature selection method for automatically generated relational attributes
• Grouping Variable Selection by Weight Fused Elastic Net for Multi-Collinear Data
• Discrimination and scoring using small sets of genes for two-sample microarray data
• Max-linear regression models with regularization
• Approximate ADMM algorithms derived from Lagrangian splitting
• A Method of Finding Predictor Genes for a Particular Disease Using a Clustering Algorithm
• Discussion of: Treelets -- an adaptive multi-scale basis for sparse unordered data
• Nonparametric significance testing and group variable selection
• Simultaneous Regression Shrinkage, Variable Selection, and Supervised Clustering of Predictors with OSCAR
• Correlated variables in regression: clustering and sparse estimation
• Regularization and Variable Selection Via the Elastic Net
• Relative-error inertial-relaxed inexact versions of Douglas-Rachford and ADMM splitting algorithms
• Deriving solution value bounds from the ADMM
• Discovering interpretable structure in longitudinal predictors via coefficient trees
• Spike and Slab Gene Selection for Multigroup Microarray Data

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