fitPoly

Authors Roeland E. Voorrips, Giorgio Tumino, Gerrit Gort, Alejandro Therese Navarro

Last update 13 February 2025

Copyright license GNU General Public License, version 2.0

Software version identifier 3.0.0, PACKAGES.rds, 4.0.0

Description

Genotyping assays for bi-allelic markers (e.g. SNPs) producesignal intensities for the two alleles. 'fitPoly' assigns genotypes (allele dosages) to a collection of polyploid samples based on thesesignal intensities. 'fitPoly' replaces the older package 'fitTetra' that waslimited (a.o.) to only tetraploid populations whereas 'fitPoly' accepts anyploidy level. Reference: Voorrips RE, Gort G, Vosman B (2011)<doi:10.1186/1471-2105-12-172>. New functions added on conversion of data from SNP array software formats, drawing of XY-scatterplots with or without genotype colors, checking against expected F1 segregation patterns, comparing results from two different assays (probes) for the same SNP, recovery from a saveMarkerModels() crash.

Cites work

Genotype calling in tetraploid species from bi-allelic marker data using mixture models

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