bi bi reaction ping pong mechanism ODE system

Community: MathModDB

mathematical expression

Available identifiers

MaRDI QIDQ6674203

system of ordinary differential equations describing a bi bi reaction with a ping pong mechanism

Defining Formula: $\begin{matrix} \frac{d c_{S_{1}}}{d t} & = k_{- 1} c_{E S_{1}} - k_{1} c_{E} c_{S_{1}} \\ \frac{d c_{S_{2}}}{d t} & = k_{- 3} c_{E * S_{2}} - k_{3} c_{E } c_{S_{2}} \\ \frac{d c_{E}}{d t} & = k_{- 1} c_{E S_{1}} + k_{4} c_{E S_{2}} - k_{1} c_{E} c_{S_{1}} - k_{- 4} c_{E} c_{P_{2}} \\ \frac{d c_{E S_{1}}}{d t} & = k_{1} c_{E} c_{S_{1}} + k_{- 2} c_{E } c_{P_{1}} - k_{- 1} c_{E S_{1}} - k_{2} c_{E S_{1}} \\ \frac{d c_{E }}{d t} & = k_{2} c_{E S_{1}} + k_{- 3} c_{E * S_{2}} - k_{- 2} c_{E } c_{P_{1}} - k_{3} c_{E } c_{S_{2}} \\ \frac{d c_{E * S_{2}}}{d t} & = k_{3} c_{E } c_{S_{2}} + k_{- 4} c_{E} c_{P_{2}} - k_{- 3} c_{E S_{2}} - k_{4} c_{E * S_{2}} \\ \frac{d c_{P_{1}}}{d t} & = k_{2} c_{E S_{1}} - k_{- 2} c_{E } c_{P_{1}} \\ \frac{d c_{P_{2}}}{d t} & = k_{4} c_{E S_{2}} - k_{- 4} c_{P_{2}} c_{E} \end{matrix}$
$\frac{d c_{E * S_{2}}}{d t}$ represents reaction rate of intermediate - substrate 2 complex
$\frac{d c_{E *}}{d t}$ represents reaction rate of intermediate
$\frac{d c_{E S_{1}}}{d t}$ represents reaction rate of enzyme - substrate 1 complex
$\frac{d c_{E}}{d t}$ represents reaction rate of enzyme
$\frac{d c_{P_{1}}}{d t}$ represents reaction rate of product 1
$\frac{d c_{P_{2}}}{d t}$ represents reaction rate of product 2
$\frac{d c_{S_{1}}}{d t}$ represents reaction rate of substrate 1
$\frac{d c_{S_{2}}}{d t}$ represents reaction rate of substrate 2
$c_{E * S_{2}}$ represents intermediate - substrate 2 complex concentration
$c_{E *}$ represents intermediate concentration
$c_{E S_{1}}$ represents enzyme - substrate 1 complex concentration
$c_{E}$ represents enzyme concentration
$c_{P_{1}}$ represents product 1 concentration
$c_{P_{2}}$ represents product 2 concentration
$c_{S_{1}}$ represents substrate 1 concentration
$c_{S_{2}}$ represents substrate 2 concentration
$k_{- 1}$ represents reaction rate constant
$k_{- 2}$ represents reaction rate constant
$k_{- 3}$ represents reaction rate constant
$k_{- 4}$ represents reaction rate constant
$k_{1}$ represents reaction rate constant
$k_{2}$ represents reaction rate constant
$k_{3}$ represents reaction rate constant
$k_{4}$ represents reaction rate constant
$t$ represents time

List of contained entities

enzyme - substrate 1 - complex concentration ODE (bi bi reaction ping pong)	$\frac{d c_{E S_{1}}}{d t} = k_{1} c_{E} c_{S_{1}} + k_{- 2} c_{E *} c_{P_{1}} - k_{- 1} c_{E S_{1}} - k_{2} c_{E S_{1}}$
	$\frac{d c_{E S_{1}}}{d t}$ represents reaction rate
	$c_{E *}$ represents concentration
	$c_{E S_{1}}$ represents concentration
	$c_{E}$ represents concentration
	$c_{P_{1}}$ represents concentration
	$c_{S_{1}}$ represents concentration
	$k_{- 1}$ represents reaction rate constant
	$k_{- 2}$ represents reaction rate constant
	$k_{1}$ represents reaction rate constant
	$k_{2}$ represents reaction rate constant
	$t$ represents time

enzyme concentration ODE (bi bi reaction ping pong)	$\frac{d c_{E}}{d t} = k_{- 1} c_{E S_{1}} + k_{4} c_{E * S_{2}} - k_{1} c_{E} c_{S_{1}} - k_{- 4} c_{E} c_{P_{2}}$
	$\frac{d c_{E}}{d t}$ represents reaction rate
	$c_{E * S_{2}}$ represents concentration
	$c_{E S_{1}}$ represents concentration
	$c_{E}$ represents concentration
	$c_{P_{2}}$ represents concentration
	$c_{S_{1}}$ represents concentration
	$k_{- 1}$ represents reaction rate constant
	$k_{- 4}$ represents reaction rate constant
	$k_{1}$ represents reaction rate constant
	$k_{4}$ represents reaction rate constant
	$t$ represents time

intermediate - substrate 2 - complex concentration ODE (bi bi reaction ping pong)	$\frac{d c_{E * S_{2}}}{d t} = k_{3} c_{E } c_{S_{2}} + k_{- 4} c_{E} c_{P_{2}} - k_{- 3} c_{E S_{2}} - k_{4} c_{E * S_{2}}$
	$\frac{d c_{E * S_{2}}}{d t}$ represents reaction rate
	$c_{E * S_{2}}$ represents concentration
	$c_{E *}$ represents concentration
	$c_{E}$ represents concentration
	$c_{P_{2}}$ represents concentration
	$c_{S_{2}}$ represents concentration
	$k_{- 3}$ represents reaction rate constant
	$k_{- 4}$ represents reaction rate constant
	$k_{3}$ represents reaction rate constant
	$k_{4}$ represents reaction rate constant
	$t$ represents time

intermediate concentration ODE (bi bi reaction ping pong)	$\frac{d c_{E }}{d t} = k_{2} c_{E S_{1}} + k_{- 3} c_{E S_{2}} - k_{- 2} c_{E } c_{P_{1}} - k_{3} c_{E } c_{S_{2}}$
	$\frac{d c_{E *}}{d t}$ represents reaction rate
	$c_{E * S_{2}}$ represents concentration
	$c_{E *}$ represents concentration
	$c_{E S_{1}}$ represents concentration
	$c_{P_{1}}$ represents concentration
	$c_{S_{2}}$ represents concentration
	$k_{- 2}$ represents reaction rate constant
	$k_{- 3}$ represents reaction rate constant
	$k_{2}$ represents reaction rate constant
	$k_{3}$ represents reaction rate constant
	$t$ represents time

product 1 concentration ODE (bi bi reaction ping pong)	$\frac{d c_{P_{1}}}{d t} = k_{2} c_{E S_{1}} - k_{- 2} c_{E *} c_{P_{1}}$
	$\frac{d c_{P_{1}}}{d t}$ represents reaction rate
	$c_{E *}$ represents concentration
	$c_{E S_{1}}$ represents concentration
	$c_{P_{1}}$ represents concentration
	$k_{- 2}$ represents reaction rate constant
	$k_{2}$ represents reaction rate constant
	$t$ represents time

product 2 concentration ODE (bi bi reaction ping pong)	$\frac{d c_{P_{2}}}{d t} = k_{4} c_{E * S_{2}} - k_{- 4} c_{P_{2}} c_{E}$
	$\frac{d c_{P_{2}}}{d t}$ represents reaction rate
	$c_{E * S_{2}}$ represents concentration
	$c_{E}$ represents concentration
	$c_{P_{2}}$ represents concentration
	$k_{- 4}$ represents reaction rate constant
	$k_{4}$ represents reaction rate constant
	$t$ represents time

substrate 1 concentration ODE (bi bi reaction ping pong)	$\frac{d c_{S_{1}}}{d t} = k_{- 1} c_{E S_{1}} - k_{1} c_{E} c_{S_{1}}$
	$\frac{d c_{S_{1}}}{d t}$ represents reaction rate
	$c_{E S_{1}}$ represents concentration
	$c_{E}$ represents concentration
	$c_{S_{1}}$ represents concentration
	$k_{- 1}$ represents reaction rate constant
	$k_{1}$ represents reaction rate constant
	$t$ represents time

substrate 2 concentration ODE (bi bi reaction ping pong)	$\frac{d c_{S_{2}}}{d t} = k_{- 3} c_{E * S_{2}} - k_{3} c_{E *} c_{S_{2}}$
	$\frac{d c_{S_{2}}}{d t}$ represents reaction rate
	$c_{E * S_{2}}$ represents concentration
	$c_{E *}$ represents concentration
	$c_{S_{2}}$ represents concentration
	$k_{- 3}$ represents reaction rate constant
	$k_{3}$ represents reaction rate constant
	$t$ represents time

Further items linking to bi bi reaction ping pong mechanism ODE system

Item	Property
bi bi reaction ping pong mechanism (ODE model)	contains

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