From Reaction Models to Influence Graphs and Back: A Theorem

DOI10.1007/978-3-540-68413-8_7MaRDI QIDQ3506870zbMATH OpenOpenAlexFDO

Authors François Fages, Sylvain Soliman

Publication date 17 June 2008

Published in Formal Methods in Systems Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-540-68413-8_7

zbMATH Keywords

Kohn's mapmass action lawMichaelis-Menten and Hill kinetics

Mathematics Subject Classification ID

Applications of graph theory (05C90) Biochemistry, molecular biology (92C40) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

Recommendations

• Influence systems vs reaction systems
• Graph theory and qualitative analysis of reaction networks
• Inferring reaction systems from ordinary differential equations
• Sensitivity of chemical reaction networks: A structural approach. 3. regular multimolecular systems
• Graph-theoretic approaches to injectivity and multiple equilibria in systems of interacting elements

Cites work

• A new necessary condition on interaction graphs for multistationarity
• Abstract interpretation and types for systems biology
• scientific article; zbMATH DE number 3771418 (Why is no real title available?)
• Modeling and querying biomolecular interaction networks
• Necessary conditions for multistationarity and stable periodicity
• Positive and negative circuits in dynamical systems

Cited in

(11)

• Influence graphs and the generalized finite difference method
• Influence systems vs reaction systems
• Graphical requirements for multistationarity in reaction networks and their verification in BioModels
• A stronger necessary condition for the multistationarity of chemical reaction networks
• Influence measures and stability for graphical models
• Molecular interaction maps as information organizers and simulation guides
• Computing the structural influence matrix for biological systems
• Inferring reaction systems from ordinary differential equations
• Continuous valuations of temporal logic specifications with applications to parameter optimization and robustness measures
• Two wrongs do not make a right: the assumption that an inhibitor acts as an inverse activator
• Stochastic kinetic models: dynamic independence, modularity and graphs

This page was built for publication: From Reaction Models to Influence Graphs and Back: A Theorem

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q3506870)