Gene Assembly Algorithms for Ciliates

DOI10.1007/11925903_6MaRDI QIDQ5452562zbMATH OpenOpenAlexFDO

Authors Lucian Ilie, Roberto Solis-Oba

Publication date 4 April 2008

Published in DNA Computing (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/11925903_6

zbMATH Keywords

algorithmgene assemblyciliatesdlad-first greedy strategystichotrichs

Mathematics Subject Classification ID

Modes of computation (nondeterministic, parallel, interactive, probabilistic, etc.) (68Q10)

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(11)

• Decision problem for shuffled genes
• Algorithmic properties of ciliate sequence alignment
• Computational efficiency of intermolecular gene assembly
• Gene assembly in ciliates. II. Formal frameworks.
• Solutions to Computational Problems Through Gene Assembly
• A model for the origin of internal eliminated segments (IESs) and gene rearrangement in stichotrichous ciliates
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• Extending the Overlap Graph for Gene Assembly in Ciliates
• The structure of elementary strategies for gene assembly in ciliates
• Computation in living cells. Gene assembly in ciliates
• Solutions to computational problems through gene assembly

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