Gene hunting with forests for multigroup time course data

DOI10.1016/J.SPL.2009.01.003MaRDI QIDQ1017807zbMATH OpenOpenAlexFDO

Authors Ariadni Papana, Hemant Ishwaran

Publication date 12 May 2009

Published in Statistics \& Probability Letters (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.spl.2009.01.003

Mathematics Subject Classification ID

Design of statistical experiments (62K99) Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)

Recommendations

• Functional Hierarchical Models for Identifying Genes with Different Time‐Course Expression Profiles
• Bayesian Hierarchical Modeling for Time Course Microarray Experiments
• Identifying temporally differentially expressed genes through functional principal components analysis
• Multiple testing for pattern identification, with applications to microarray time-course experiments
• Multicriteria gene screening for analysis of differential expression with DNA microarrays

Cites work

• Cluster analysis of gene expression dynamics
• Comparing the continuous representation of time-series expression profiles to identify differentially expressed genes
• Random forests
• Robust Locally Weighted Regression and Smoothing Scatterplots
• Variable importance in binary regression trees and forests

Cited in

(1)

• A high performance biomarker detection method for exhaled breath mass spectrometry data

Describes a project that uses

Uses Software

• randomForest
• maSigPro

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