| Publication | Date of Publication | Type |
|---|
Tribute to Arto Salomaa. A towering figure in theoretical computer science
Bulletin of the European Association for Theoretical Computer Science EATCS | 2025-04-22 | Paper |
Decomposition of infinite labeled 2-structures
Lecture Notes in Computer Science | 2024-01-29 | Paper |
Reaction Systems, Transition Systems, and Equivalences
Adventures Between Lower Bounds and Higher Altitudes | 2023-06-30 | Paper |
CIRCULARITY AND OTHER INVARIANTS OF GENE ASSEMBLY IN CILIATES
Words, Semigroups, and Transductions | 2022-12-06 | Paper |
Facilitation in reaction systems
Journal of Membrane Computing | 2021-09-14 | Paper |
A model for the origin of internal eliminated segments (IESs) and gene rearrangement in stichotrichous ciliates
Journal of Theoretical Biology | 2020-10-28 | Paper |
Plug-in context providers for reaction systems
Theoretical Computer Science | 2020-08-17 | Paper |
Template-guided recombination for IES elimination and unscrambling of genes in stichotrichous ciliates
Journal of Theoretical Biology | 2020-05-06 | Paper |
Reaction systems with influence on environment
Journal of Membrane Computing | 2020-02-24 | Paper |
Networks of reaction systems
International Journal of Foundations of Computer Science | 2020-02-21 | Paper |
Graph transformation through graph surfing in reaction systems
Journal of Logical and Algebraic Methods in Programming | 2019-11-28 | Paper |
| scientific article; zbMATH DE number 7075943 (Why is no real title available?) | 2019-07-03 | Paper |
Linking reaction systems with rough sets
Fundamenta Informaticae | 2019-05-24 | Paper |
| Petri nets for biologically motivated computing | 2019-02-08 | Paper |
Theory of 2-structures
Automata, Languages and Programming | 2019-01-10 | Paper |
Group based graph transformations and hierarchical representations of graphs
Lecture Notes in Computer Science | 2019-01-10 | Paper |
Reaction systems: a model of computation inspired by the functioning of the living cell
The Role of Theory in Computer Science | 2018-09-20 | Paper |
| Graph surfing by reaction systems | 2018-08-24 | Paper |
Model checking temporal properties of reaction systems
Information Sciences | 2018-05-16 | Paper |
Evolving reaction systems
Theoretical Computer Science | 2017-06-15 | Paper |
Applying regions
Theoretical Computer Science | 2016-12-19 | Paper |
Pancyclicity in switching classes
Information Processing Letters | 2016-06-16 | Paper |
Standard and ordered zoom structures
Theoretical Computer Science | 2015-12-10 | Paper |
Hairpin languages
International Journal of Foundations of Computer Science | 2015-04-30 | Paper |
Zoom structures and reaction systems yield exploration systems
International Journal of Foundations of Computer Science | 2014-11-14 | Paper |
RESEARCH FRONTIERS OF MEMBRANE COMPUTING: OPEN PROBLEMS AND RESEARCH TOPICS
International Journal of Foundations of Computer Science | 2014-03-24 | Paper |
Tree transducers, L systems and two-way machines (extended abstract)
Proceedings of the tenth annual ACM symposium on Theory of computing - STOC '78 | 2014-03-14 | Paper |
Membrane systems with marked membranes
Electronic Notes in Theoretical Computer Science | 2013-12-06 | Paper |
Bridging membrane and reaction systems -- further results and research topics
Fundamenta Informaticae | 2013-11-28 | Paper |
Step semantics of Boolean nets
Acta Informatica | 2013-06-26 | Paper |
In memoriam: Carl Adam Petri
Transactions on Petri Nets and Other Models of Concurrency VII | 2013-05-31 | Paper |
Minimal reaction systems
Lecture Notes in Computer Science | 2013-04-03 | Paper |
Reaction systems: a natural computing approach to the functioning of living cells
A Computable Universe | 2013-02-26 | Paper |
Stability and chaos in reaction systems
International Journal of Foundations of Computer Science | 2013-01-18 | Paper |
Relevance of entities in reaction systems
Lecture Notes in Computer Science | 2012-11-01 | Paper |
Preface
Theoretical Computer Science | 2012-10-11 | Paper |
Preface
Theoretical Computer Science | 2012-10-11 | Paper |
A formal framework for processes inspired by the functioning of living cells
Implementation and Application of Automata | 2012-09-20 | Paper |
A tour of reaction systems
International Journal of Foundations of Computer Science | 2012-08-29 | Paper |
Representing reaction systems by trees
Computation, Physics and Beyond | 2012-06-15 | Paper |
| scientific article; zbMATH DE number 5976065 (Why is no real title available?) | 2011-11-22 | Paper |
Reaction systems with duration
Computation, Cooperation, and Life | 2011-06-24 | Paper |
On aggregation in multiset-based self-assembly of graphs
Natural Computing | 2011-05-23 | Paper |
Functions defined by reaction systems
International Journal of Foundations of Computer Science | 2011-02-23 | Paper |
Reaction Systems: A Model of Computation Inspired by Biochemistry
Developments in Language Theory | 2010-08-31 | Paper |
Combinatorics of life and death for reaction systems
International Journal of Foundations of Computer Science | 2010-06-18 | Paper |
Computing morphisms by spiking neural P systems
International Journal of Foundations of Computer Science | 2010-01-29 | Paper |
| scientific article; zbMATH DE number 5604098 (Why is no real title available?) | 2009-09-15 | Paper |
| Gene assembly in ciliates. II. Formal frameworks. | 2009-09-15 | Paper |
REDUCTION GRAPHS FROM OVERLAP GRAPHS FOR GENE ASSEMBLY IN CILIATES
International Journal of Foundations of Computer Science | 2009-06-23 | Paper |
Aspects of Molecular Computing
Lecture Notes in Computer Science | 2009-05-14 | Paper |
Simple Operations for Gene Assembly
DNA Computing | 2009-04-02 | Paper |
Introducing time in reaction systems
Theoretical Computer Science | 2009-03-02 | Paper |
Summary of the Workshop on Natural Computing and Graph Transformations
Lecture Notes in Computer Science | 2008-11-20 | Paper |
Membrane systems with proteins embedded in membranes
Theoretical Computer Science | 2008-11-06 | Paper |
Patterns of simple gene assembly in ciliates
Discrete Applied Mathematics | 2008-10-17 | Paper |
Graph Transformation Units – An Overview
Concurrency, Graphs and Models | 2008-06-19 | Paper |
| Communication membrane systems with active symports | 2008-06-18 | Paper |
| Process semantics for membrane systems | 2008-06-18 | Paper |
| Computer science, informatics, and natural computing -- personal reflections | 2008-04-29 | Paper |
| scientific article; zbMATH DE number 5252391 (Why is no real title available?) | 2008-03-20 | Paper |
From Micro to Macro: How the Overlap Graph Determines the Reduction Graph in Ciliates
Fundamentals of Computation Theory | 2008-02-26 | Paper |
Natural Computing: A Natural and Timely Trend for Natural Sciences and Science of Computation
Lecture Notes in Computer Science | 2007-11-13 | Paper |
Biochemical Reactions as Computations
Lecture Notes in Computer Science | 2007-11-13 | Paper |
Theory Inspired by Gene Assembly in Ciliates
Implementation and Application of Automata | 2007-09-06 | Paper |
Membrane Systems with External Control
Membrane Computing | 2007-09-03 | Paper |
Formalizing Spherical Membrane Structures and Membrane Proteins Populations
Membrane Computing | 2007-09-03 | Paper |
Graph Transformations
Lecture Notes in Computer Science | 2007-06-21 | Paper |
Events and modules in reaction systems
Theoretical Computer Science | 2007-05-11 | Paper |
The construction of minimal DNA expressions
Natural Computing | 2007-04-19 | Paper |
Application of mismatch detection methods in DNA computing
Natural Computing | 2007-04-19 | Paper |
Parallelism in gene assembly
Natural Computing | 2007-04-19 | Paper |
Cycles and communicating classes in membrane systems and molecular dynamics
Theoretical Computer Science | 2007-03-27 | Paper |
| scientific article; zbMATH DE number 5129595 (Why is no real title available?) | 2007-02-26 | Paper |
| Multiset-based self-assembly of graphs | 2007-02-26 | Paper |
| Reaction systems | 2007-02-26 | Paper |
| The embedding problem for switching classes of graphs | 2007-01-19 | Paper |
Finite metrics in switching classes
Discrete Applied Mathematics | 2007-01-09 | Paper |
| Interpreted trajectories | 2006-11-21 | Paper |
Membrane Computing
Lecture Notes in Computer Science | 2006-11-13 | Paper |
DNA Computing
Lecture Notes in Computer Science | 2006-10-19 | Paper |
DNA Computing
Lecture Notes in Computer Science | 2006-10-19 | Paper |
DNA Computing
Lecture Notes in Computer Science | 2006-10-19 | Paper |
SPIKE TRAINS IN SPIKING NEURAL P SYSTEMS
International Journal of Foundations of Computer Science | 2006-08-21 | Paper |
Embedding linear orders in grids
Acta Informatica | 2006-05-26 | Paper |
Reducibility of gene patterns in ciliates using the breakpoint graph.
Theoretical Computer Science | 2006-05-18 | Paper |
COVERS FROM TEMPLATES
International Journal of Foundations of Computer Science | 2006-05-10 | Paper |
Developments in Language Theory
Lecture Notes in Computer Science | 2005-12-22 | Paper |
Protein output for DNA computing
Natural Computing | 2005-12-08 | Paper |
Formal Methods in Software and Systems Modeling
Lecture Notes in Computer Science | 2005-12-02 | Paper |
COMPUTING BY COMMUNICATION IN NETWORKS OF MEMBRANES
International Journal of Foundations of Computer Science | 2005-06-22 | Paper |
DNA computing. New computing paradigms.
Texts in Theoretical Computer Science. An EATCS Series | 2005-04-26 | Paper |
Computation in living cells. Gene assembly in ciliates
Natural Computing Series | 2005-04-26 | Paper |
| scientific article; zbMATH DE number 2156287 (Why is no real title available?) | 2005-04-15 | Paper |
| scientific article; zbMATH DE number 2156288 (Why is no real title available?) | 2005-04-15 | Paper |
Theory Is Forever
Lecture Notes in Computer Science | 2005-01-18 | Paper |
Zebra factorizations in free semigroups.
Semigroup Forum | 2004-10-01 | Paper |
| scientific article; zbMATH DE number 2087027 (Why is no real title available?) | 2004-08-11 | Paper |
Transitivity of local complementation and switching on graphs.
Discrete Mathematics | 2004-03-14 | Paper |
| scientific article; zbMATH DE number 2016091 (Why is no real title available?) | 2003-12-10 | Paper |
