HHBayes

Last update 10 April 2026

Copyright license MIT license, File License

Description

Provides a streamlined pipeline to simulate household infection dynamics, estimate transmission parameters, and visualize epidemic timelines. Uses a Bayesian approach with 'Stan' that models transmission probability as a function of viral load, seasonality and infectivity, multiple infection episodes (reinfections), and waning immunity modeling. Li et al. (2026) <doi:10.64898/2026.04.01.26349903>).

Cites work

HHBayes : A Flexible Bayesian Framework for Simulating and Analyzing Household Transmission Dynamics

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