Identifying anticancer peptides by using a generalized chaos game representation

DOI10.1007/S00285-018-1279-XMaRDI QIDQ1738032zbMATH OpenOpenAlexWikidataFDO

Authors Li Ge, Jiaguo Liu, Yusen Zhang, Matthias Dehmer

Publication date 29 March 2019

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s00285-018-1279-x

zbMATH Keywords

anticancer peptideschaos game representationsimilarity analysissupport vector machine

Mathematics Subject Classification ID

Applications of game theory (91A80) Computational methods for problems pertaining to biology (92-08) Protein sequences, DNA sequences (92D20)

Recommendations

• Analysis of similarity/dissimilarity of DNA sequences based on chaos game representation
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• Statistical Feature Selection from Chaos Game Representation for Promoter Recognition
• iPPI-PseAAC(CGR): identify protein-protein interactions by incorporating chaos game representation into PseAAC

Cites work

• A 3D graphical representation of protein sequences based on the Gray code
• A new method for analyzing H5N1 avian influenza virus
• A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
• A novel representation for apoptosis protein subcellular localization prediction using support vector machine
• Chaos game representation of protein sequences based on the detailed HP model and their multifractal and correlation analyses
• Comparative analysis of protein primary sequences with graph energy
• Predicting anticancer peptides with Chou's pseudo amino acid composition and investigating their mutagenicity via ames test
• Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation
• Support-vector networks

Cited in

(3)

• iPPI-PseAAC(CGR): identify protein-protein interactions by incorporating chaos game representation into PseAAC
• Predicting anticancer peptides with Chou's pseudo amino acid composition and investigating their mutagenicity via ames test
• Statistical Feature Selection from Chaos Game Representation for Promoter Recognition

Describes a project that uses

Uses Software

• e1071
• LIBSVM
• IsoRank
• iACP
• ape
• ClustalW
• Cd-hit

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