Inference of biochemical S-systems via mixed-variable multiobjective evolutionary optimization

DOI10.1155/2017/3020326MaRDI QIDQ1705330zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Yu Chen, D. Chen, Xiufen Zou

Publication date 15 March 2018

Published in Computational \& Mathematical Methods in Medicine (Search for Journal in Brave)

Copyright license Creative Commons Attribution 4.0 International

Full work available at URL https://doi.org/10.1155/2017/3020326

zbMATH Keywords

biobjective optimizationmixed-variable multiobjective evolutionary algorithmS-systems

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42)

Recommendations

• Evolutionary Multi-Criterion Optimization
• Bi-objective optimization of biochemical systems by linear programming
• Parameter reconstruction for biochemical networks using interval analysis
• Inference of \(S\)-system models of genetic networks by solving one-dimensional function optimization problems
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Cites work

• Autoregressive models for gene regulatory network inference: sparsity, stability and causality issues
• Differential evolution -- a simple and efficient heuristic for global optimization over continuous spaces
• Evolutionary Multi-Criterion Optimization
• Review on statistical methods for gene network reconstruction using expression data

Cited in

(2)

• Inverse problem studies of biochemical systems with structure identification of S-systems by embedding training functions in a genetic algorithm
• Inference of \(S\)-system models of genetic networks by solving one-dimensional function optimization problems

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