Inferring Knowledge Based Potentials Using Contrastive Divergence

DOI10.1007/978-3-642-27225-7_5MaRDI QIDQ2820285zbMATH OpenOpenAlexFDO

Authors Alexei A. Podtelezhnikov, David L. Wild

Publication date 15 September 2016

Published in Statistics for Biology and Health (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-642-27225-7_5

zbMATH Keywords

reference statesforce constantsgeometrical cut-offsMetropolis Monte Carlo procedure

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Computational methods for problems pertaining to biology (92-08)

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• On the physical relevance and statistical interpretation of knowledge-based potentials
• Using an abstraction of amino acid types to improve the quality of statistical potentials for protein structure prediction
• Model of protein fragments and statistical potentials

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