Bioinformatics algorithms. Sequence analysis, genome rearrangements, and phylogenetic reconstruction (Q5397902)
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scientific article; zbMATH DE number 6261402
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| English | Bioinformatics algorithms. Sequence analysis, genome rearrangements, and phylogenetic reconstruction |
scientific article; zbMATH DE number 6261402 |
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25 February 2014
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bioinformatics algorithms
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sequence analysis
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genome rearrangements
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phylogenetic reconstruction
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exact string matching
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Boyer-Moore-Horspool algorithm
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Knuth-Morris-Pratt algorithm
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Aho-Corasick algorithm
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range minimum queries
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lowest common ancestor
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enhanced suffix arrays
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LCP-array
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LCP-interval tree
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Lempel-Ziv factorization
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repeats
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maximal repeats
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string comparison
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transversals with suffix links
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multiple string comparison
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string kernels
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compressed suffix and LCP arrays
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compressed full text indexes
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Burrows-Wheeler transform
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wavelet trees
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space efficient string comparison
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bidirectional search
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approximate string matching
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pairwise sequence alignment
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multiple sequence alignment
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whole genome alignment
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reversals sorting
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ultrametric distance
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UPGMA algorithm
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splits
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quartets
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neighbour joining algorithms
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non-additive dissimilarity matrices
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0.8569738268852234
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0.8329824209213257
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0.8329824209213257
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0.7831474542617798
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0.7732747197151184
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