locuszoomr (Q5975520)
From MaRDI portal
Gene Locus Plot with Gene Annotations
| Language | Label | Description | Also known as |
|---|---|---|---|
| English | locuszoomr |
Gene Locus Plot with Gene Annotations |
Statements
Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' <https://my.locuszoom.org>, but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API <https://ldlink.nih.gov/?tab=apiaccess> to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots.
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17 February 2024
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