SpaTopic (Q5977855)
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Topic Inference to Identify Tissue Architecture in Multiplexed Images
| Language | Label | Description | Also known as |
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| default for all languages | No label defined |
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| English | SpaTopic |
Topic Inference to Identify Tissue Architecture in Multiplexed Images |
Statements
A novel spatial topic model to integrate both cell type and spatial information to identify the complex spatial tissue architecture on multiplexed tissue images without human intervention. The Package implements a Collapsed Gibbs sampling algorithm for inference. 'SpaTopic' is scalable to large-scale image datasets without extracting neighborhood information for every single cell. For more details on the methodology, see <https://xiyupeng.github.io/SpaTopic/>.
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17 January 2024
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