sjSDM (Q60102)

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Scalable Joint Species Distribution Modeling
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    sjSDM
    Scalable Joint Species Distribution Modeling

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      1.0.4
      30 March 2023
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      1.0.0
      10 January 2022
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      1.0.1
      11 March 2022
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      1.0.2
      24 June 2022
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      1.0.3
      14 September 2022
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      1.0.5
      17 June 2023
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      17 June 2023
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      A scalable method to estimate joint Species Distribution Models (jSDMs) for big community datasets based on a Monte Carlo approximation of the joint likelihood. The numerical approximation is based on 'PyTorch' and 'reticulate', and can be run on CPUs and GPUs alike. The method is described in Pichler & Hartig (2021) <doi:10.1111/2041-210X.13687>. The package contains various extensions, including support for different response families, ability to account for spatial autocorrelation, and deep neural networks instead of the linear predictor in jSDMs.
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